Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005087`

染色体: Chr02 坐标: 72480290-72482320 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005087`
名称	SmilChr02G005087
描述	xyloglucan endotransglucosylase/hydrolase protein 24-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72480290 - 72482320 / `+`

ID 对照

NCBI Gene ID	`LOC131009083`
GeneID	`131009083`
locus_tag	`-`
NCBI Name	`LOC131009083`
原始查询	`LOC131009083`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	xyloglucan endotransglucosylase/hydrolase protein 24-like
产物	xyloglucan endotransglucosylase/hydrolase protein 24-like
Arabidopsis	`AT4G14130` (XTH15) xyloglucan endotransglucosylase/hydrolase 15 [Source:NCBI gene (formerly Entrezgene);Acc:827051] identity=61.7; qcov=0.962; evalue=5.25e-127; confidence=high
Rice	`Os06g0696600` (OsXTH12) - identity=61; qcov=0.928; evalue=1.01e-124; confidence=high
GO	GO:0004553 (hydrolase activity, hydrolyzing O-glycosyl compounds); GO:0005618 (cell wall); GO:0010411 (xyloglucan metabolic process); GO:0016762 (xyloglucan:xyloglucosyl transferase activity); GO:0042546 (cell wall biogenesis); GO:0048046 (apoplast)
KEGG	-
Pfam	PF00722 (Glyco_hydro_16); PF06955 (XET_C)
InterPro	-
eggNOG	-
NR	GeneID:131009083

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell wall	细胞壁	0.80000	`XP_057792270.1`
2	Golgi apparatus	高尔基体	0.20000	`XP_057792270.1`
3	Vacuole	液泡	0.20000	`XP_057792270.1`
4	Nucleus	细胞核	0.00000	`XP_057792270.1`
5	Chromosome	染色体	0.00000	`XP_057792270.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72480429`	`ATC`	`A`	2bp_deletion	frameshift_variant	77	A1,A13,A19,A20,A23,A4,A5,B100,B106,B108,B111,B113,B114,B119,B12,B120,B125,B127,B13,B130,B134,B136,B137,B16,B17,B23,B25,B26,B28,B38,B39,B41,B45,B47,B49,B53,B59,B61,B72,B77,B78,B79,B8,B80,B81,B83,B84,B85,B89,B95,B98,C12,C13,C15,C21,C24,C34,C38,C43,C44,C50,C59,C65,C67,C71,C72,C73,C77,C78,C82,C84,C9,D1,D2,D3,D6,D9
`Chr2:72480598`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:72480721`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B26
`Chr2:72480961`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B98,D3
`Chr2:72480981`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B2,D5
`Chr2:72481839`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B48
`Chr2:72481850`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B140
`Chr2:72481875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr2:72481897`	`CG`	`C`	1bp_deletion	frameshift_variant	34	A13,A20,A24,A4,A5,B133,B17,B21,B28,B31,B38,B39,B44,B56,B66,B72,B76,B80,B84,B85,B96,C13,C24,C31,C38,C44,C48,C50,C59,C78,C82,D1,D2,D4
`Chr2:72481900`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B104,B71,C62
`Chr2:72481937`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B136
`Chr2:72482030`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B17,B85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792270.1

293 aa

146

293

Glyco_hydro_16

XET_C

PF00722 Glyco_hydro_16 49-226 aa PF06955 XET_C 244-288 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792270.1`	Pfam	`PF00722`	Glyco_hydro_16	Domain	49	226	1.9e-65	220.3	Glycosyl hydrolases family 16
`XP_057792270.1`	Pfam	`PF06955`	XET_C	Family	244	288	2.1e-17	63.3	Xyloglucan endo-transglycosylase (XET) C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936287.1
CATGGCTTCATCATTTACGCGTCCAATTATTCTGTCTGCTCTCTCCAGCCAGCTTCCGCTCCTTGCGATCCAGCTCACCACCATTCCTACTATATATACACTTCACCTTTCATGCAACTCTTTCATCAAACAATGAATCATCTCTCTCTCTCTCTCTCGCATTACAAAATGGCAGCACCATTCCTCTCACAGTTAGTAGCCTTCTTCTCAGCTCTCGCGGCCCTGAGCAGCTTCGCCGCCGCCAATTTCTACGGCGACGC...

CDS

1 records

下载 CDS FASTA

LOC131009083
ATGCAACTCTTTCATCAAACAATGAATCATCTCTCTCTCTCTCTCTCGCATTACAAAATGGCAGCACCATTCCTCTCACAGTTAGTAGCCTTCTTCTCAGCTCTCGCGGCCCTGAGCAGCTTCGCCGCCGCCAATTTCTACGGCGACGCGGAGATCACGTGGGGCGAGGGGCGCGGCAAGATCCTCGAAGGGGGCCGCGGCCTCTCCCTGTCGCTGGACAGATACTCCGGCTCCGGCTTCCAATCCAAGAAGGAGTTTCT...

Protein

1 records

下载 Protein FASTA

XP_057792270.1
MQLFHQTMNHLSLSLSHYKMAAPFLSQLVAFFSALAALSSFAAANFYGDAEITWGEGRGKILEGGRGLSLSLDRYSGSGFQSKKEFLFGRFDMQLKLIPGNSAGTVTTFFLSSQGPGHDEIDFEFLGNSSGNPYTVHTNVYSQGKGDKEQQFHLWFDPTAAFHTYSIVWNPNKIIFLVDNSPIRVFNNHVGSGVAFPTKQAMRVYCSLWNADDWATQGGRVKTDWAHAPFTAYYRNFKIEGCAAGSWCAAQELDGKARNR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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