当前解析结果
SmilChr02G005089| 统一新 Gene ID | SmilChr02G005089 |
|---|---|
| 名称 | SmilChr02G005089 |
| 描述 | integrin-linked protein kinase 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72485185 - 72490779 / - |
| NCBI Gene ID | LOC131009086 |
|---|---|
| GeneID | 131009086 |
| locus_tag | - |
| NCBI Name | LOC131009086 |
| 原始查询 | LOC131009086 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | integrin-linked protein kinase 1-like |
| 产物 | integrin-linked protein kinase 1-like |
| Arabidopsis | AT3G58760 (AT3G58760)Integrin-linked protein kinase family [Source:NCBI gene (formerly Entrezgene);Acc:825045] identity=64.3; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0748600 (P0481E12.28-1)- identity=62.2; qcov=0.954; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF00069 (Pkinase); PF07714 (PK_Tyr_Ser-Thr); PF12796 (Ank_2); PF13637 (Ank_4) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009086 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792273.1 |
| 2 | Cell membrane | 细胞膜 | 1.00000 | XP_057792273.1 |
| 3 | Cytoplasm | 细胞质 | 0.80000 | XP_057792273.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792273.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792273.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72485544 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B136,B98,C40 |
Chr2:72485629 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B46,B78,B98,C62,D3 |
Chr2:72486554 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C84,D11 |
Chr2:72486580 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B136,B98 |
Chr2:72486586 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C7 |
Chr2:72487637 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | B16 |
Chr2:72487637 |
C |
CT |
1bp_insertion | CDS_variant | 1 | B16 |
Chr2:72487652 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B113 |
Chr2:72487845 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr2:72488321 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A3 |
Chr2:72489171 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B104,C47 |
Chr2:72490312 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B23 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792273.1PF13637
Ank_4 43-92 aa
PF12796
Ank_2 43-130 aa
PF00023
Ank 71-102 aa
PF07714
PK_Tyr_Ser-Thr 162-413 aa
PF00069
Pkinase 168-410 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792273.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 43 | 92 | 2.5e-06 | 28.3 | Ankyrin repeats (many copies) |
XP_057792273.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 43 | 130 | 3.4e-16 | 60.3 | Ankyrin repeats (3 copies) |
XP_057792273.1 |
Pfam | PF00023 |
Ank | Repeat | 71 | 102 | 8.4e-14 | 51.6 | Ankyrin repeat |
XP_057792273.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 162 | 413 | 3.4e-56 | 191.1 | Protein tyrosine and serine/threonine kinase |
XP_057792273.1 |
Pfam | PF00069 |
Pkinase | Domain | 168 | 410 | 3.9e-52 | 178.0 | Protein kinase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。