当前解析结果
SmilChr02G005096| 统一新 Gene ID | SmilChr02G005096 |
|---|---|
| 名称 | SmilChr02G005096 |
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72524507 - 72533042 / - |
| NCBI Gene ID | LOC131009092 |
|---|---|
| GeneID | 131009092 |
| locus_tag | - |
| NCBI Name | LOC131009092 |
| 原始查询 | LOC131009092 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
| 产物 | probable LRR receptor-like serine/threonine-protein kinase At1g07650 |
| Arabidopsis | AT1G07650 (AT1G07650)Leucine-rich repeat transmembrane protein kinase [Source:NCBI gene (formerly Entrezgene);Acc:837278] identity=61.4; qcov=0.99; evalue=0; confidence=high |
| Rice | Os08g0203400 (SHR5)- identity=45.3; qcov=0.946; evalue=0; confidence=high |
| GO | GO:0004672 (protein kinase activity); GO:0005515 (protein binding); GO:0005524 (ATP binding); GO:0006468 (protein phosphorylation) |
| KEGG | - |
| Pfam | PF00069 (Pkinase); PF00560 (LRR_1); PF07714 (PK_Tyr_Ser-Thr); PF11721 (Malectin); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009092 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792284.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792284.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792284.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792284.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792284.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72524768 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B96 |
Chr2:72524768 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B96 |
Chr2:72524790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72524840 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B4,C22,C3,C70 |
Chr2:72524850 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C3,C70 |
Chr2:72524876 |
GA |
G |
1bp_deletion | frameshift_variant | 1 | B27 |
Chr2:72524876 |
GA |
G |
1bp_deletion | CDS_variant | 1 | B27 |
Chr2:72524914 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:72524928 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C32,C35,C68 |
Chr2:72524940 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C51 |
Chr2:72525003 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:72525292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B16,B47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792284.1PF00560
LRR_1 111-132 aa
PF00560
LRR_1 206-226 aa
PF00560
LRR_1 277-299 aa
PF13855
LRR_8 277-336 aa
PF00560
LRR_1 302-323 aa
PF11721
Malectin 409-593 aa
PF00069
Pkinase 671-871 aa
PF07714
PK_Tyr_Ser-Thr 671-939 aa
XP_057792285.1PF00560
LRR_1 9-29 aa
PF00560
LRR_1 80-102 aa
PF13855
LRR_8 80-139 aa
PF00560
LRR_1 105-126 aa
PF11721
Malectin 212-396 aa
PF00069
Pkinase 474-674 aa
PF07714
PK_Tyr_Ser-Thr 474-742 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792284.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 111 | 132 | 3.1e-21 | 71.6 | Leucine Rich Repeat |
XP_057792284.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 206 | 226 | 3.1e-21 | 71.6 | Leucine Rich Repeat |
XP_057792284.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 277 | 299 | 3.1e-21 | 71.6 | Leucine Rich Repeat |
XP_057792284.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 277 | 336 | 7.7e-19 | 67.9 | Leucine rich repeat |
XP_057792284.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 302 | 323 | 3.1e-21 | 71.6 | Leucine Rich Repeat |
XP_057792284.1 |
Pfam | PF11721 |
Malectin | Domain | 409 | 593 | 5.4e-41 | 141.1 | Malectin domain |
XP_057792284.1 |
Pfam | PF00069 |
Pkinase | Domain | 671 | 871 | 7.2e-46 | 157.4 | Protein kinase domain |
XP_057792284.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 671 | 939 | 9.5e-51 | 173.3 | Protein tyrosine and serine/threonine kinase |
XP_057792285.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 9 | 29 | 6.5e-15 | 52.8 | Leucine Rich Repeat |
XP_057792285.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 80 | 102 | 6.5e-15 | 52.8 | Leucine Rich Repeat |
XP_057792285.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 80 | 139 | 1.3e-11 | 44.7 | Leucine rich repeat |
XP_057792285.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 105 | 126 | 6.5e-15 | 52.8 | Leucine Rich Repeat |
XP_057792285.1 |
Pfam | PF11721 |
Malectin | Domain | 212 | 396 | 3.8e-41 | 141.6 | Malectin domain |
XP_057792285.1 |
Pfam | PF00069 |
Pkinase | Domain | 474 | 674 | 4.9e-46 | 158.0 | Protein kinase domain |
XP_057792285.1 |
Pfam | PF07714 |
PK_Tyr_Ser-Thr | Domain | 474 | 742 | 6.3e-51 | 173.9 | Protein tyrosine and serine/threonine kinase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。