当前解析结果
SmilChr02G005101| 统一新 Gene ID | SmilChr02G005101 |
|---|---|
| 名称 | SmilChr02G005101 |
| 描述 | probable sugar phosphate/phosphate translocator At1g06470 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72552066 - 72559973 / + |
| NCBI Gene ID | LOC131009099 |
|---|---|
| GeneID | 131009099 |
| locus_tag | - |
| NCBI Name | LOC131009099 |
| 原始查询 | LOC131009099 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable sugar phosphate/phosphate translocator At1g06470 |
| 产物 | probable sugar phosphate/phosphate translocator At1g06470 |
| Arabidopsis | AT1G06470 (AT1G06470)Nucleotide/sugar transporter family protein [Source:NCBI gene (formerly Entrezgene);Acc:837159] identity=71.9; qcov=0.785; evalue=0; confidence=high |
| Rice | Os06g0153200- identity=67.1; qcov=0.761; evalue=6.58e-179; confidence=high |
| GO | GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0005794 (Golgi apparatus); GO:0005801 (cis-Golgi network); GO:0015297 (antiporter activity); GO:0015786 (UDP-glucose transmembrane transport) |
| KEGG | - |
| Pfam | PF03151 (TPT); PF08449 (UAA) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009099 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Golgi apparatus | 高尔基体 | 1.00000 | XP_057792294.1 |
| 2 | Trans-golgi network | Trans-golgi network | 0.60000 | XP_057792294.1 |
| 3 | Vacuole membrane | 液泡膜 | 0.20000 | XP_057792294.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792294.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792294.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72552981 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B133,C84 |
Chr2:72552983 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B122,B16,B33,D11 |
Chr2:72553118 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C10,C81 |
Chr2:72553176 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C17,C22 |
Chr2:72553184 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72553195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C10,C81 |
Chr2:72553215 |
C |
CA |
1bp_insertion | frameshift_variant | 71 | A10,A14,A15,A2,A24,A3,A5,A6,B100,B101,B107,B110,B111,B112,B123,B128,B13,B134,B135,B138,B25,B26,B4,B50,B53,B57,B6,B61,B62,B66,B68,B7,B70,B71,B72,B74,B76,B8,B95,C11,C15,C17,C20,C26,C27,C31,C32,C33,C4,C42,C44,C45,C49,C57,C58,C60,C61,C63,C64,C66,C68,C69,C72,C73,C83,C85,C86,C87,D4,D5,D8 |
Chr2:72553356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:72553488 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:72553557 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B98,C74 |
Chr2:72557448 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B10,B111,B26,B72 |
Chr2:72557807 |
ACT |
A |
2bp_deletion | frameshift_variant | 1 | B118 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792294.1PF03151
TPT 162-460 aa
PF08449
UAA 198-460 aa
XP_057792295.1PF03151
TPT 162-460 aa
PF08449
UAA 198-460 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792294.1 |
Pfam | PF03151 |
TPT | Family | 162 | 460 | 1.7e-26 | 94.0 | Triose-phosphate Transporter family |
XP_057792294.1 |
Pfam | PF08449 |
UAA | Family | 198 | 460 | 7.8e-08 | 32.5 | UAA transporter family |
XP_057792295.1 |
Pfam | PF03151 |
TPT | Family | 162 | 460 | 1.7e-26 | 94.0 | Triose-phosphate Transporter family |
XP_057792295.1 |
Pfam | PF08449 |
UAA | Family | 198 | 460 | 7.8e-08 | 32.5 | UAA transporter family |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。