当前解析结果
SmilChr02G005111| 统一新 Gene ID | SmilChr02G005111 |
|---|---|
| 名称 | SmilChr02G005111 |
| 描述 | cytochrome P450 CYP72A219-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 72631822 - 72632954 / + |
| NCBI Gene ID | LOC131009109 |
|---|---|
| GeneID | 131009109 |
| locus_tag | - |
| NCBI Name | LOC131009109 |
| 原始查询 | LOC131009109 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cytochrome P450 CYP72A219-like |
| 产物 | cytochrome P450 CYP72A219-like |
| Arabidopsis | AT3G14690 (CYP72A15)cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=51.6; qcov=1; evalue=1.1e-63; confidence=high |
| Rice | Os01g0627500 (OsCYP72A18)- identity=49.7; qcov=1.02; evalue=8.89e-59; confidence=high |
| GO | GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding) |
| KEGG | - |
| Pfam | PF00067 (p450) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009109 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792307.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057792307.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792307.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792307.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792307.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:72632022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B129,B73 |
Chr2:72632059 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr2:72632073 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:72632105 |
TA |
T |
1bp_deletion | frameshift_variant | 44 | A11,A13,A19,A22,A24,B101,B109,B113,B118,B120,B122,B140,B16,B30,B36,B45,B46,B47,B58,B65,B7,B76,B77,B82,C1,C12,C14,C15,C19,C24,C34,C38,C4,C41,C50,C62,C64,C66,C72,C76,C84,C85,D11,D8 |
Chr2:72632113 |
G |
GT |
1bp_insertion | frameshift_variant | 98 | A1,A10,A14,A15,A16,A2,A20,A21,A22,A23,A25,A3,A7,A8,A9,B102,B104,B106,B108,B113,B115,B117,B119,B12,B120,B121,B123,B124,B125,B126,B129,B13,B131,B134,B14,B18,B19,B2,B20,B21,B22,B24,B25,B28,B29,B31,B33,B35,B38,B39,B40,B42,B43,B50,B51,B52,B59,B65,B68,B71,B72,B73,B75,B79,B85,B86,B87,B99,C11,C13,C14,C16,C19,C20,C29,C33,C36,C42,C45,C46,C51,C52,C56,C59,C6,C60,C62,C64,C66,C67,C69,C71,C78,C80,C82,C9,D5,D7 |
Chr2:72632250 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B4,B9,B98,C8 |
Chr2:72632300 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B103,B130,B89 |
Chr2:72632313 |
C |
T |
EMS_canonical_SNV | stop_gained | 6 | A23,B4,B9,B98,C8,D4 |
Chr2:72632323 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A10,B7,C42,C60 |
Chr2:72632327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D6 |
Chr2:72632340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,D6 |
Chr2:72632347 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B88 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792307.1PF00067
p450 2-183 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792307.1 |
Pfam | PF00067 |
p450 | Domain | 2 | 183 | 1.6e-15 | 57.5 | Cytochrome P450 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。