Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005115`

染色体: Chr02 坐标: 72666026-72669893 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005115`
名称	SmilChr02G005115
描述	putative late blight resistance protein homolog R1B-14
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72666026 - 72669893 / `-`

ID 对照

NCBI Gene ID	`LOC131009110`
GeneID	`131009110`
locus_tag	`-`
NCBI Name	`LOC131009110`
原始查询	`LOC131009110`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	putative late blight resistance protein homolog R1B-14
产物	putative late blight resistance protein homolog R1B-14
Arabidopsis	`AT1G50180` (AT1G50180) NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:841440] identity=27.9; qcov=0.947; evalue=1.4e-72; confidence=low
Rice	`Os07g0186500` - identity=31.2; qcov=0.828; evalue=2.96e-76; confidence=low
GO	GO:0043531 (ADP binding); GO:0098542 (defense response to other organism)
KEGG	-
Pfam	PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131009110

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	0.80000	`XP_057792308.1`
2	Cytosol	细胞质基质	0.40000	`XP_057792308.1`
3	Cytoplasm	细胞质	0.20000	`XP_057792308.1`
4	Nucleus	细胞核	0.00000	`XP_057792308.1`
5	Chromosome	染色体	0.00000	`XP_057792308.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72666960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr2:72666970`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B45,B72,C12,C58
`Chr2:72666972`	`G`	`GA`	1bp_insertion	frameshift_variant	1	A7
`Chr2:72666972`	`G`	`GA`	1bp_insertion	CDS_variant	1	A7
`Chr2:72666978`	`A`	`AT`	1bp_insertion	frameshift_variant	4	B45,B72,C12,C58
`Chr2:72666978`	`A`	`AT`	1bp_insertion	CDS_variant	4	B45,B72,C12,C58
`Chr2:72666980`	`G`	`GA`	1bp_insertion	frameshift_variant	2	B117,C37
`Chr2:72666980`	`G`	`GA`	1bp_insertion	CDS_variant	2	B117,C37
`Chr2:72667005`	`CTG`	`C`	2bp_deletion	frameshift_variant	23	A13,A20,A21,A5,B100,B112,B127,B4,B41,B44,B48,B62,B64,B8,B81,B86,B9,C18,C44,C50,C7,C77,C8
`Chr2:72667027`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C1
`Chr2:72667339`	`T`	`TTG`	2bp_insertion	frameshift_variant	106	A1,A11,A13,A14,A15,A18,A19,A2,A23,A24,A3,A6,A7,A8,A9,B10,B100,B103,B105,B107,B109,B11,B117,B118,B120,B125,B129,B130,B133,B134,B135,B137,B14,B17,B23,B25,B27,B28,B4,B40,B42,B45,B46,B47,B5,B50,B53,B57,B6,B60,B61,B62,B64,B66,B69,B70,B73,B75,B77,B78,B82,B87,B90,B92,B95,B98,C10,C12,C14,C15,C19,C20,C21,C22,C24,C27,C31,C34,C36,C38,C40,C48,C49,C5,C53,C56,C57,C58,C60,C61,C63,C64,C66,C70,C72,C73,C74,C76,C79,C84,C87,D11,D2,D3,D6,D8
`Chr2:72667430`	`G`	`GCT`	2bp_insertion	frameshift_variant	13	A2,B110,B132,B28,B29,B43,B60,B79,B84,C31,C56,C86,D2

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792308.1

860 aa

430

860

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 151-318 aa PF23559 WHD_DRP 396-465 aa PF23598 LRR_14 497-701 aa

XP_057792309.1

860 aa

430

860

NB-ARC

WHD_DRP

LRR_14

PF00931 NB-ARC 151-318 aa PF23559 WHD_DRP 396-465 aa PF23598 LRR_14 497-701 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792308.1`	Pfam	`PF00931`	NB-ARC	Domain	151	318	1.2e-44	152.7	NB-ARC domain
`XP_057792308.1`	Pfam	`PF23559`	WHD_DRP	Domain	396	465	2.3e-20	73.1	Disease resistance protein Winged helix domain
`XP_057792308.1`	Pfam	`PF23598`	LRR_14	Repeat	497	701	1.3e-20	74.3	Leucine-rich repeat region
`XP_057792309.1`	Pfam	`PF00931`	NB-ARC	Domain	151	318	1.2e-44	152.7	NB-ARC domain
`XP_057792309.1`	Pfam	`PF23559`	WHD_DRP	Domain	396	465	2.3e-20	73.1	Disease resistance protein Winged helix domain
`XP_057792309.1`	Pfam	`PF23598`	LRR_14	Repeat	497	701	1.3e-20	74.3	Leucine-rich repeat region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XR_009096403.1
TTTTTTGCTACACGTATTCTACTTCACACCACACAACCAACTCTAATTCACATCCACACACCTTAGACATTGGAGGTCTTCTCCGTCAACGTTTCTCCCTCCCTCGCTCATCTCTCCCTAAACCACCATCGCTTCTCATCTCTCCTTCCTTTGATTTGCTCAAAGATGGCCTACGCTGCTCTGTCTTCACTTGCCCAAACAACACACCAAATCCTCAATCACGATCAATACCTCATCTCCCACGATGAAAAACAACAAGT...

XM_057936325.1
TTTTTTGCTACACGTATTCTACTTCACACCACACAACCAACTCTAATTCACATCCACACACCTTAGACATTGGAGGTCTTCTCCGTCAACGTTTCTCCCTCCCTCGCTCATCTCTCCCTAAACCACCATCGCTTCTCATCTCTCCTTCCTTTGATTTGCTCAAAGATGGCCTACGCTGCTCTGTCTTCACTTGCCCAAACAACACACCAAATCCTCAATCACGATCAATACCTCATCTCCCACGATGAAAAACAACAAGT...

CDS

2 records

下载 CDS FASTA

LOC131009110
ATGGCCTACGCTGCTCTGTCTTCACTTGCCCAAACAACACACCAAATCCTCAATCACGATCAATACCTCATCTCCCACGATGAAAAACAACAAGTCACACTGCTCCGTGGAAAAGTTATTTTCTTGCGAGAAGCTTTCCACAAGTTTCCAAAGCAAGCCAGCAGCTTGGAAGCAAGAATCAGGGGCTCCGCCAACCAGGCAGAGGATATCATCGAGCATTTCATGTACGACCAAATTTGGAATCATTATTATTCGACTAC...

Protein

2 records

下载 Protein FASTA

XP_057792308.1
MAYAALSSLAQTTHQILNHDQYLISHDEKQQVTLLRGKVIFLREAFHKFPKQASSLEARIRGSANQAEDIIEHFMYDQIWNHYYSTTNNPHHLHNDLEKAMEEINSISREAEDFTTEDSAALGDDDSPTVRISSSMQQLSGGITVGLDEDLLKIVDSLNGGSSNRQIIPIVGMGGIGKTTLAQKVYHHPKITETFEIRAWVTVSQDYKAQNIYSDLLACFEEVGIERFEQSNECLEVKVHKILKGRKYLIVLDDMWSQNA...

XP_057792309.1
MAYAALSSLAQTTHQILNHDQYLISHDEKQQVTLLRGKVIFLREAFHKFPKQASSLEARIRGSANQAEDIIEHFMYDQIWNHYYSTTNNPHHLHNDLEKAMEEINSISREAEDFTTEDSAALGDDDSPTVRISSSMQQLSGGITVGLDEDLLKIVDSLNGGSSNRQIIPIVGMGGIGKTTLAQKVYHHPKITETFEIRAWVTVSQDYKAQNIYSDLLACFEEVGIERFEQSNECLEVKVHKILKGRKYLIVLDDMWSQNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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