Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005149`

染色体: Chr02 坐标: 72875111-72879373 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005149`
名称	SmilChr02G005149
描述	cytochrome P450 CYP72A219-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	72875111 - 72879373 / `+`

ID 对照

NCBI Gene ID	`LOC131009143`
GeneID	`131009143`
locus_tag	`-`
NCBI Name	`LOC131009143`
原始查询	`LOC131009143`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cytochrome P450 CYP72A219-like
产物	cytochrome P450 CYP72A219-like
Arabidopsis	`AT3G14690` (CYP72A15) cytochrome P450, family 72, subfamily A, polypeptide 15 [Source:NCBI gene (formerly Entrezgene);Acc:820697] identity=59.7; qcov=1.01; evalue=2.31e-174; confidence=high
Rice	`Os01g0627800` - identity=58.4; qcov=1.02; evalue=7.35e-164; confidence=high
GO	GO:0004497 (monooxygenase activity); GO:0005506 (iron ion binding); GO:0016705 (oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen); GO:0020037 (heme binding)
KEGG	-
Pfam	PF00067 (p450)
InterPro	-
eggNOG	-
NR	GeneID:131009143

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057792348.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057792349.1`
3	Nucleus	细胞核	0.00000	`XP_057792348.1`
4	Chromosome	染色体	0.00000	`XP_057792348.1`
5	Centromere	着丝粒	0.00000	`XP_057792348.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:72875205`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B137,B26,B30,B79,C5
`Chr2:72875321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C2,D7
`Chr2:72875803`	`AT`	`A`	1bp_deletion	frameshift_variant	1	B87
`Chr2:72875803`	`AT`	`A`	1bp_deletion	CDS_variant	1	B87
`Chr2:72875817`	`T`	`TG`	1bp_insertion	frameshift_variant	1	B87
`Chr2:72875817`	`T`	`TG`	1bp_insertion	CDS_variant	1	B87
`Chr2:72875901`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:72875910`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	B110
`Chr2:72875910`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B110
`Chr2:72875946`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B83,C59
`Chr2:72876199`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B137,B26,B30,B79,C5
`Chr2:72876414`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B67

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792348.1

511 aa

256

511

p450

PF00067 p450 84-484 aa

XP_057792349.1

378 aa

189

378

p450

PF00067 p450 3-351 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792348.1`	Pfam	`PF00067`	p450	Domain	84	484	7.8e-81	272.9	Cytochrome P450
`XP_057792349.1`	Pfam	`PF00067`	p450	Domain	3	351	1e-74	252.7	Cytochrome P450

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936365.1
ATCTCTTCAGCTATCGATCATCTTCAATAAACTTCTTCCCTTTTCTCTTCTCTTCTCTTTGAGTGCAAAAAAAATCAATTAACTAAGCATGGATGTTTTCATTTCTACAGTGGAAATTTCTTGCGGTGTTGTAGCTCTAATATACGTATGGAAACTATTGAATTGGGTGTGGTTTACCCCCAAAAAACAAGAAAAATTACTGCGGCAGCAGGGCTTCAACGGAAATTCTTACAAGCTTTTCTATGGAGATTTCAAAGAGA...

XM_057936366.1
AAGGAGCATCACCAAAGAAGCCTTGTCCAAACCTATGAATTTTTCCAACGAGATTGCGCCTAGAGCTATTCCCATCTACCACCAAACCACCCAAAAATATGTTGTGATCAGGTGAGAATAGCTTTAGTTGGTTTGGGCCAAAGCTTGCAGTAAACATCACAGATCCTGAAATAATACGAGAGATTACGTCCAAGAATTATGTTTTCCAGAAGCCAAGTGGTAATCCATTTCGTAAGATGCTCGCTAAAGGGATAGCAACA...

CDS

2 records

下载 CDS FASTA

LOC131009143
ATGGATGTTTTCATTTCTACAGTGGAAATTTCTTGCGGTGTTGTAGCTCTAATATACGTATGGAAACTATTGAATTGGGTGTGGTTTACCCCCAAAAAACAAGAAAAATTACTGCGGCAGCAGGGCTTCAACGGAAATTCTTACAAGCTTTTCTATGGAGATTTCAAAGAGATAAGGAGCATCACCAAAGAAGCCTTGTCCAAACCTATGAATTTTTCCAACGAGATTGCGCCTAGAGCTATTCCCATCTACCACCAAAC...

LOC131009143
ATGCTCGCTAAAGGGATAGCAACATACGAGACGGATAAATGGGCCAAGCACCGGAAACTCGTCAATCCCGCCTTCCACGTCGACAAATTGAAGCATATGGTTCCATCATTCTACTTGAGCTGTGGTGAAATGTTGAGCAAATGGGATGAGATTGTGGGAAATGAAGGTGAAGTGGATGTGTGGCCTCATCTTCAGACAATGACGAGCGATGTGATTTCAAGAACTGCGTTTGGGAGTAGCTACGAGGAAGGAAGAAAGAT...

Protein

2 records

下载 Protein FASTA

XP_057792348.1
MDVFISTVEISCGVVALIYVWKLLNWVWFTPKKQEKLLRQQGFNGNSYKLFYGDFKEIRSITKEALSKPMNFSNEIAPRAIPIYHQTTQKYGENSFSWFGPKLAVNITDPEIIREITSKNYVFQKPSGNPFRKMLAKGIATYETDKWAKHRKLVNPAFHVDKLKHMVPSFYLSCGEMLSKWDEIVGNEGEVDVWPHLQTMTSDVISRTAFGSSYEEGRKIFELQREQGKLIMDSTRSLYIPGWRFMPTKFNKRMKELVAE...

XP_057792349.1
MLAKGIATYETDKWAKHRKLVNPAFHVDKLKHMVPSFYLSCGEMLSKWDEIVGNEGEVDVWPHLQTMTSDVISRTAFGSSYEEGRKIFELQREQGKLIMDSTRSLYIPGWRFMPTKFNKRMKELVAEIESLVLGIINKRINAAEGSADDLLGLLLESNLKEMKQHGNESGMSIEEVIEECKLFYFAGQETTSSLLVWTMILLSKHDDWQARARDEVLQVFGGGKPDYQELNHLKTVNMILHEALRLYPPGVLLTRSTQKE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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