当前解析结果
SmilChr02G005173| 统一新 Gene ID | SmilChr02G005173 |
|---|---|
| 名称 | SmilChr02G005173 |
| 描述 | ketol-acid reductoisomerase, chloroplastic |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73031943 - 73035794 / - |
| NCBI Gene ID | LOC131009163 |
|---|---|
| GeneID | 131009163 |
| locus_tag | - |
| NCBI Name | LOC131009163 |
| 原始查询 | LOC131009163 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ketol-acid reductoisomerase, chloroplastic |
| 产物 | ketol-acid reductoisomerase%2C chloroplastic |
| Arabidopsis | AT3G58610 (AT3G58610)ketol-acid reductoisomerase [Source:NCBI gene (formerly Entrezgene);Acc:825030] identity=88.1; qcov=0.952; evalue=0; confidence=high |
| Rice | Os05g0573700- identity=89.8; qcov=0.875; evalue=0; confidence=high |
| GO | GO:0004455 (ketol-acid reductoisomerase activity); GO:0005739 (mitochondrion); GO:0009097 (GO:0009097); GO:0009099 (L-valine biosynthetic process); GO:0009507 (chloroplast) |
| KEGG | smil00290 (Valine, leucine and isoleucine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00770 (Pantothenate and CoA biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01450 (KARI_C); PF07991 (KARI_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009163 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Chloroplast | 叶绿体 | 1.00000 | XP_057792374.1 |
| 2 | Chloroplast stroma | 叶绿体基质 | 1.00000 | XP_057792374.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792374.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792374.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792374.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73032168 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr2:73032174 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B104,B124,B45,C13 |
Chr2:73032189 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:73032276 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B78,B95,C57 |
Chr2:73032366 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:73032401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B114 |
Chr2:73032435 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B5,B90,B92,C21,C73 |
Chr2:73032861 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A18,B122,B140,B61,C73 |
Chr2:73033009 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:73033015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C48 |
Chr2:73033063 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A18,B122,B140,C73 |
Chr2:73034811 |
ATG |
A |
2bp_deletion | frameshift_variant | 17 | A1,B113,B115,B24,B41,B49,B51,B58,B60,B91,B93,C14,C17,C41,C66,C8,D1 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792374.1PF07991
KARI_N 113-287 aa
PF01450
KARI_C 296-440 aa
PF01450
KARI_C 453-522 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792374.1 |
Pfam | PF07991 |
KARI_N | Family | 113 | 287 | 2.8e-31 | 109.0 | Acetohydroxy acid isomeroreductase, NADPH-binding domain |
XP_057792374.1 |
Pfam | PF01450 |
KARI_C | Domain | 296 | 440 | 7e-44 | 150.4 | Ketol-acid reductoisomerase, C-terminal domain |
XP_057792374.1 |
Pfam | PF01450 |
KARI_C | Domain | 453 | 522 | 7e-44 | 150.4 | Ketol-acid reductoisomerase, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。