Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005171`

染色体: Chr02 坐标: 73022384-73027079 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005171`
名称	SmilChr02G005171
描述	bifunctional riboflavin kinase/FMN phosphatase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73022384 - 73027079 / `+`

ID 对照

NCBI Gene ID	`LOC131009164`
GeneID	`131009164`
locus_tag	`-`
NCBI Name	`LOC131009164`
原始查询	`LOC131009164`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional riboflavin kinase/FMN phosphatase-like
产物	bifunctional riboflavin kinase/FMN phosphatase-like
Arabidopsis	`AT4G21470` (FMN/FHY) riboflavin kinase/FMN hydrolase [Source:NCBI gene (formerly Entrezgene);Acc:828232] identity=44.8; qcov=0.995; evalue=5.07e-100; confidence=medium
Rice	`Os10g0464400` (GLN) - identity=45.1; qcov=1.01; evalue=2.86e-103; confidence=high
GO	GO:0006114 (glycerol biosynthetic process); GO:0008531 (riboflavin kinase activity); GO:0009231 (riboflavin biosynthetic process); GO:0043136 (sn-glycerol 3-phosphatase activity)
KEGG	smil00740 (Riboflavin metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01240 (Biosynthesis of cofactors - Salvia miltiorrhiza (redroot sage))
Pfam	PF00702 (Hydrolase); PF01687 (Flavokinase); PF12710 (HAD); PF13242 (Hydrolase_like); PF13419 (HAD_2)
InterPro	-
eggNOG	-
NR	GeneID:131009164

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792375.1`
2	Cytoplasm	细胞质	0.80000	`XP_057792375.1`
3	Nucleus	细胞核	0.00000	`XP_057792375.1`
4	Chromosome	染色体	0.00000	`XP_057792375.1`
5	Centromere	着丝粒	0.00000	`XP_057792375.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73022917`	`TTG`	`T`	2bp_deletion	frameshift_variant	1	D11
`Chr2:73022917`	`TTG`	`T`	2bp_deletion	CDS_variant	1	D11
`Chr2:73023433`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B137,B55
`Chr2:73023459`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:73023480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B78,B95,C57
`Chr2:73024396`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B33,D7
`Chr2:73024398`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B49
`Chr2:73025434`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B122,B137,B55,C2
`Chr2:73025529`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B110,B121,B18
`Chr2:73025665`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:73025993`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B114,B69
`Chr2:73026484`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B63,C82

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792375.1

381 aa

190

381

Hydrolase

HAD

HAD_2

Hydrolase_like

Flavokinase

PF00702 Hydrolase 12-187 aa PF12710 HAD 15-146 aa PF13419 HAD_2 15-194 aa PF13242 Hydrolase_like 150-196 aa PF01687 Flavokinase 267-328 aa

XP_057792376.1

364 aa

182

364

Hydrolase

HAD

HAD_2

Hydrolase_like

Flavokinase

PF00702 Hydrolase 12-187 aa PF12710 HAD 15-146 aa PF13419 HAD_2 15-194 aa PF13242 Hydrolase_like 150-196 aa PF01687 Flavokinase 267-328 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792375.1`	Pfam	`PF00702`	Hydrolase	Domain	12	187	2.7e-28	100.4	haloacid dehalogenase-like hydrolase
`XP_057792375.1`	Pfam	`PF12710`	HAD	Family	15	146	5.4e-07	30.9	haloacid dehalogenase-like hydrolase
`XP_057792375.1`	Pfam	`PF13419`	HAD_2	Family	15	194	2.1e-28	100.3	Haloacid dehalogenase-like hydrolase
`XP_057792375.1`	Pfam	`PF13242`	Hydrolase_like	Domain	150	196	4.5e-05	24.0	HAD-hyrolase-like
`XP_057792375.1`	Pfam	`PF01687`	Flavokinase	Domain	267	328	0.00054	20.9	Riboflavin kinase
`XP_057792376.1`	Pfam	`PF00702`	Hydrolase	Domain	12	187	2.3e-28	100.6	haloacid dehalogenase-like hydrolase
`XP_057792376.1`	Pfam	`PF12710`	HAD	Family	15	146	4.8e-07	31.1	haloacid dehalogenase-like hydrolase
`XP_057792376.1`	Pfam	`PF13419`	HAD_2	Family	15	194	1.9e-28	100.4	Haloacid dehalogenase-like hydrolase
`XP_057792376.1`	Pfam	`PF13242`	Hydrolase_like	Domain	150	196	4.1e-05	24.1	HAD-hyrolase-like
`XP_057792376.1`	Pfam	`PF01687`	Flavokinase	Domain	267	328	0.00044	21.2	Riboflavin kinase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936393.1
TACTATTTGTAACGAAGCAAAAGAAGCTTCTATTTTGGGAAAGTCAAGAAGAGTTGTTCGAGGCATATGCCTCGAACAATCCTCCGCCTACAGTTCCCTTATTCACTTGGAATACTTTCAAGTTCCATAGCCCAACAAAGCTCTTCACATTCAGATTCATCTACCCATAAACCCCTCTTGCAATGAGAATCTATCCCTCTCTATTTCAATCACAACTCTCCCATTCAATCACGTTACACCATCAGCAATCCGCATTCATA...

XM_057936392.1
ATTTGTAACGAAGCAAAAGAAGCTTCTATTTTGGGAAAGTCAAGAAGAGTTGTTCGAGGCATATGCCTCGAACAATCCTCCGCCTACAGTTCCCTTATTCACTTGGAATACTTTCAAGTTCCATAGCCCAACAAAGCTCTTCACATTCAGATTCATCTACCCATAAACCCCTCTTGCAATGAGAATCTATCCCTCTCTATTTCAATCACAACTCTCCCATTCAATCACGTTACACCATCAGCAATCCGCATTCATAGCCG...

CDS

2 records

下载 CDS FASTA

LOC131009164
ATGGGCTCCGAGAATTCCGCCCCCAATCCTCAGATTTCCGCCGTCATATTCGATTTGGACGGCACCCTTTTGAACACAGAGGATGTTACGAAGAATGTATTGAAGAATTTCCTGGCGAAATACGGGAAGGTGCAGGACAATGAGAAGGAGAAGAAGAGATTGGGCATGACTTTCAAGGAATCATGTCTTACAATTGTGAGTGACTATGATCTTCCACTAACCACGGAGGAATATGTCAAGGAAATCTTGCCAATGTACCA...

Protein

2 records

下载 Protein FASTA

XP_057792375.1
MGSENSAPNPQISAVIFDLDGTLLNTEDVTKNVLKNFLAKYGKVQDNEKEKKRLGMTFKESCLTIVSDYDLPLTTEEYVKEILPMYQGTWLLAKPLPGANRLMRHLHEHGVPFALASNSLRKNIDGKISHHDGWKDNFKVILGSDEVKSGKPAPDLFLEAAKRMEVDPSCCLVIEDSIVGVKAGKAAKMKVVAVPSLENESDSYSIADSILHSLLEFQPEHWGLPQFDDWVGNALPTEPILLTGVLRNGLFQAYSDNALS...

XP_057792376.1
MGSENSAPNPQISAVIFDLDGTLLNTEDVTKNVLKNFLAKYGKVQDNEKEKKRLGMTFKESCLTIVSDYDLPLTTEEYVKEILPMYQGTWLLAKPLPGANRLMRHLHEHGVPFALASNSLRKNIDGKISHHDGWKDNFKVILGSDEVKSGKPAPDLFLEAAKRMEVDPSCCLVIEDSIVGVKAGKAAKMKVVAVPSLENESDSYSIADSILHSLLEFQPEHWGLPQFDDWVGNALPTEPILLTGVLRNGLFQAYSDNALS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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