当前解析结果
SmilChr02G005175| 统一新 Gene ID | SmilChr02G005175 |
|---|---|
| 名称 | SmilChr02G005175 |
| 描述 | uncharacterized SmilChr02G005175 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73049867 - 73053673 / + |
| NCBI Gene ID | LOC131009167 |
|---|---|
| GeneID | 131009167 |
| locus_tag | - |
| NCBI Name | LOC131009167 |
| 原始查询 | LOC131009167 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:NCBI gene (formerly Entrezgene);Acc:825029]; symbol=AT3G58600; hit=AT3G58600; species=arabidopsis; confidence=high |
| 产物 | Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:NCBI gene (formerly Entrezgene);Acc:825029]; symbol=AT3G58600; hit=AT3G58600; species=arabidopsis; confidence=high |
| Arabidopsis | AT3G58600 (AT3G58600)Adaptin ear-binding coat-associated protein 1 NECAP-1 [Source:NCBI gene (formerly Entrezgene);Acc:825029] identity=64.3; qcov=1.02; evalue=6.16e-112; confidence=high |
| Rice | Os01g0614700 (OsABCI13)- identity=58.9; qcov=1; evalue=4.93e-111; confidence=high |
| GO | GO:0006897 (endocytosis); GO:0016020 (membrane); GO:0030125 (clathrin vesicle coat) |
| KEGG | - |
| Pfam | PF07933 (DUF1681) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009167 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792380.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057792380.1 |
| 3 | Trans-golgi network | Trans-golgi network | 0.40000 | XP_057792380.1 |
| 4 | Vesicle | 囊泡 | 0.40000 | XP_057792380.1 |
| 5 | Nucleus | 细胞核 | 0.20000 | XP_057792380.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73050214 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:73051699 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,B55 |
Chr2:73051707 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A15,B59 |
Chr2:73052686 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,C2 |
Chr2:73052990 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B132,B89 |
Chr2:73053132 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C47 |
Chr2:73053243 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B78,B95,C57 |
Chr2:73053327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:73053341 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B106,B109,B128 |
Chr2:73053370 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:73053372 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B73,C47 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792380.1PF07933
DUF1681 23-182 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792380.1 |
Pfam | PF07933 |
DUF1681 | Domain | 23 | 182 | 2.1e-52 | 177.7 | Protein of unknown function (DUF1681) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。