当前解析结果
SmilChr02G005186| 统一新 Gene ID | SmilChr02G005186 |
|---|---|
| 名称 | SmilChr02G005186 |
| 描述 | basic leucine zipper 61-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73172860 - 73175859 / - |
| NCBI Gene ID | LOC131009179 |
|---|---|
| GeneID | 131009179 |
| locus_tag | - |
| NCBI Name | LOC131009179 |
| 原始查询 | LOC131009179 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | basic leucine zipper 61-like |
| 产物 | basic leucine zipper 61-like |
| Arabidopsis | AT3G58120 (BZIP61)Basic-leucine zipper (bZIP) transcription factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:824981] identity=51.4; qcov=1.1; evalue=7.31e-107; confidence=high |
| Rice | Os01g0756200 (OsbZIP06)- identity=50.5; qcov=0.889; evalue=2.19e-76; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00170 (bZIP_1); PF03131 (bZIP_Maf); PF07716 (bZIP_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009179 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792408.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792408.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792408.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792408.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792408.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73175225 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,C79 |
Chr2:73175252 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:73175301 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C7 |
Chr2:73175301 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C7 |
Chr2:73175303 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B118,B26,B65,D10 |
Chr2:73175332 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
Chr2:73175390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A24,B2,B98 |
Chr2:73175401 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B61 |
Chr2:73175452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B109,B19 |
Chr2:73175480 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B118,B65,D10 |
Chr2:73175501 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B102,B61,B63,C48,C85 |
Chr2:73175525 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,C63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792408.1PF03131
bZIP_Maf 188-249 aa
PF07716
bZIP_2 196-243 aa
PF00170
bZIP_1 198-245 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792408.1 |
Pfam | PF03131 |
bZIP_Maf | Coiled-coil | 188 | 249 | 5.3e-05 | 24.4 | bZIP Maf transcription factor |
XP_057792408.1 |
Pfam | PF07716 |
bZIP_2 | Coiled-coil | 196 | 243 | 3e-08 | 34.3 | Basic region leucine zipper |
XP_057792408.1 |
Pfam | PF00170 |
bZIP_1 | Coiled-coil | 198 | 245 | 1.7e-09 | 38.3 | bZIP transcription factor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。