Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005201`

染色体: Chr02 坐标: 73267746-73279949 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005201`
名称	SmilChr02G005201
描述	homeobox-DDT domain protein RLT2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73267746 - 73279949 / `+`

ID 对照

NCBI Gene ID	`LOC131009191`
GeneID	`131009191`
locus_tag	`-`
NCBI Name	`LOC131009191`
原始查询	`LOC131009191`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	homeobox-DDT domain protein RLT2
产物	homeobox-DDT domain protein RLT2
Arabidopsis	`AT5G44180` (RLT2) Homeodomain-like transcriptional regulator [Source:NCBI gene (formerly Entrezgene);Acc:834441] identity=47.5; qcov=0.954; evalue=0; confidence=high
Rice	`Os05g0562400` - identity=51.2; qcov=0.727; evalue=0; confidence=high
GO	GO:0003677 (DNA binding); GO:0006357 (regulation of transcription by RNA polymerase II)
KEGG	-
Pfam	PF00046 (Homeodomain); PF02791 (DDT); PF05066 (HARE-HTH); PF15612 (WHIM1); PF15613 (WSD); PF31066 (DUF8799)
InterPro	-
eggNOG	-
NR	GeneID:131009191

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792424.1`
2	Chromosome	染色体	0.00000	`XP_057792424.1`
3	Centromere	着丝粒	0.00000	`XP_057792424.1`
4	Chromatin	染色质	0.00000	`XP_057792424.1`
5	Telomere	端粒	0.00000	`XP_057792424.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73269625`	`AG`	`A`	1bp_deletion	frameshift_variant	8	A2,A22,B126,B29,B58,B81,B94,C20
`Chr2:73269628`	`AGC`	`A`	2bp_deletion	frameshift_variant	1	B55
`Chr2:73269628`	`AGC`	`A`	2bp_deletion	CDS_variant	1	B55
`Chr2:73269631`	`AGC`	`A`	2bp_deletion	frameshift_variant	71	A11,A25,A3,A5,B104,B108,B109,B110,B112,B113,B118,B125,B129,B132,B134,B139,B15,B17,B21,B25,B26,B27,B29,B30,B32,B37,B47,B48,B56,B59,B61,B67,B74,B76,B77,B79,B8,B85,B87,B89,B96,B97,B98,C1,C18,C19,C22,C23,C24,C26,C29,C3,C30,C32,C34,C39,C47,C5,C51,C56,C60,C65,C67,C68,C72,C77,C81,C82,D4,D6,D9
`Chr2:73269634`	`AG`	`A`	1bp_deletion	frameshift_variant	72	A11,A25,A3,A5,B104,B108,B109,B110,B112,B113,B118,B125,B129,B132,B134,B139,B15,B17,B21,B25,B26,B27,B29,B30,B32,B37,B47,B48,B55,B56,B59,B61,B67,B74,B76,B77,B79,B8,B85,B87,B89,B96,B97,B98,C1,C18,C19,C22,C23,C24,C26,C29,C3,C30,C32,C34,C39,C47,C5,C51,C56,C60,C65,C67,C68,C72,C77,C81,C82,D4,D6,D9
`Chr2:73271528`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B39,B59
`Chr2:73271538`	`C`	`CA`	1bp_insertion	frameshift_variant	4	B39,B59,B60,C5
`Chr2:73271538`	`C`	`CA`	1bp_insertion	CDS_variant	4	B39,B59,B60,C5
`Chr2:73272214`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B70
`Chr2:73272235`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:73272798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B131,B53
`Chr2:73275473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C39

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792424.1

1787 aa

894

1787

Homeodomain

DDT

HARE-HTH

WHIM1

WSD

DUF8799

PF00046 Homeodomain 40-95 aa PF02791 DDT 576-631 aa PF05066 HARE-HTH 751-819 aa PF15612 WHIM1 965-1007 aa PF15613 WSD 1139-1211 aa PF31066 DUF8799 1374-1437 aa

XP_057792425.1

1785 aa

892

1785

Homeodomain

DDT

HARE-HTH

WHIM1

WSD

DUF8799

PF00046 Homeodomain 40-95 aa PF02791 DDT 574-629 aa PF05066 HARE-HTH 749-817 aa PF15612 WHIM1 963-1005 aa PF15613 WSD 1137-1209 aa PF31066 DUF8799 1372-1435 aa

XP_057792426.1

1557 aa

778

1557

DDT

HARE-HTH

WHIM1

WSD

DUF8799

PF02791 DDT 346-401 aa PF05066 HARE-HTH 521-589 aa PF15612 WHIM1 735-777 aa PF15613 WSD 909-981 aa PF31066 DUF8799 1144-1207 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792424.1`	Pfam	`PF00046`	Homeodomain	Domain	40	95	3.8e-16	59.3	Homeodomain
`XP_057792424.1`	Pfam	`PF02791`	DDT	Family	576	631	1.8e-21	76.7	DDT domain
`XP_057792424.1`	Pfam	`PF05066`	HARE-HTH	Family	751	819	2.4e-18	67.0	HB1, ASXL, restriction endonuclease HTH domain
`XP_057792424.1`	Pfam	`PF15612`	WHIM1	Motif	965	1007	1.3e-09	38.1	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057792424.1`	Pfam	`PF15613`	WSD	Family	1139	1211	1.1e-20	74.3	Williams-Beuren syndrome DDT (WSD), D-TOX E motif
`XP_057792424.1`	Pfam	`PF31066`	DUF8799	Domain	1374	1437	5.9e-24	84.4	Domain of unknown function (DUF8799)
`XP_057792425.1`	Pfam	`PF00046`	Homeodomain	Domain	40	95	3.8e-16	59.3	Homeodomain
`XP_057792425.1`	Pfam	`PF02791`	DDT	Family	574	629	1.8e-21	76.7	DDT domain
`XP_057792425.1`	Pfam	`PF05066`	HARE-HTH	Family	749	817	2.4e-18	67.0	HB1, ASXL, restriction endonuclease HTH domain
`XP_057792425.1`	Pfam	`PF15612`	WHIM1	Motif	963	1005	1.3e-09	38.1	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057792425.1`	Pfam	`PF15613`	WSD	Family	1137	1209	1.1e-20	74.3	Williams-Beuren syndrome DDT (WSD), D-TOX E motif
`XP_057792425.1`	Pfam	`PF31066`	DUF8799	Domain	1372	1435	5.9e-24	84.4	Domain of unknown function (DUF8799)
`XP_057792426.1`	Pfam	`PF02791`	DDT	Family	346	401	1.5e-21	77.0	DDT domain
`XP_057792426.1`	Pfam	`PF05066`	HARE-HTH	Family	521	589	2e-18	67.3	HB1, ASXL, restriction endonuclease HTH domain
`XP_057792426.1`	Pfam	`PF15612`	WHIM1	Motif	735	777	1.1e-09	38.4	WSTF, HB1, Itc1p, MBD9 motif 1
`XP_057792426.1`	Pfam	`PF15613`	WSD	Family	909	981	8.6e-21	74.6	Williams-Beuren syndrome DDT (WSD), D-TOX E motif
`XP_057792426.1`	Pfam	`PF31066`	DUF8799	Domain	1144	1207	4.9e-24	84.7	Domain of unknown function (DUF8799)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936441.1
ACAAATTATGGATAAGCCAAGTAATCTTTAGAATATCCACAAAAAATAAATGAAAACCCAATAAGAGATTAAAGCCATGTTTCACTCCGATTTGAAGCACAAATGTCTCCTTCAATGTGGGTGCTGGTCCCACCATCTGATAATTAACGTCCCGTGAAAGTACATTCGAATCAGAATCTTCCCCACCGCCCCGCCTAGCGCGTGCTCCCCACGCAGCGGCGGAAACCCCCCGCGCGTGTAGACAAACTCCGGAAAACCGC...

XM_057936442.1
ACAAATTATGGATAAGCCAAGTAATCTTTAGAATATCCACAAAAAATAAATGAAAACCCAATAAGAGATTAAAGCCATGTTTCACTCCGATTTGAAGCACAAATGTCTCCTTCAATGTGGGTGCTGGTCCCACCATCTGATAATTAACGTCCCGTGAAAGTACATTCGAATCAGAATCTTCCCCACCGCCCCGCCTAGCGCGTGCTCCCCACGCAGCGGCGGAAACCCCCCGCGCGTGTAGACAAACTCCGGAAAACCGC...

CDS

3 records

下载 CDS FASTA

LOC131009191
ATGGAGGTTGATGAAGGGAGCAGCAGCGGCGGAGGAGGAGAAGGAGGTGGTGGTGGTGTTGGTGTTGGTGAAAGTGTGGGGACAGCGAAGAAGAACTCGGCGGAGGGAGAGGCAAAGGTGAAGCGCAAAATGAAGACTCCTTCTCAGTTGGAAGTTCTTGAAAAAACATATGCTATTGAGACATATCCTTCAGAAGCATTGCGAGCAGAGCTCTCTGTTAAATTAGGGCTGACTGATCGGCAGCTGCAAATGTGGTTCTG...

Protein

3 records

下载 Protein FASTA

XP_057792424.1
MEVDEGSSSGGGGEGGGGGVGVGESVGTAKKNSAEGEAKVKRKMKTPSQLEVLEKTYAIETYPSEALRAELSVKLGLTDRQLQMWFCHRRLKDRKPSAEKRQKKSTITSAVAEFSSGTVPEKVVSSSDVANDSRSGLNLFGNMEQQQQQQQQQQRVAHKAGTAVPRISTELPSMRRYYEPPLAISEQRAIKFVEAQLGEPLRDDGPILGMEFDPLPPGAFGAPIVTSDQQKRAGRSYDAHLYERLDAKPIKGASRVVHEY...

XP_057792425.1
MEVDEGSSSGGGGEGGGGGVGVGESVGTAKKNSAEGEAKVKRKMKTPSQLEVLEKTYAIETYPSEALRAELSVKLGLTDRQLQMWFCHRRLKDRKPSAEKRQKKSTITSAVAEFSSGTVPEKVVSSSDVANDSRSGLNLFGNMEQQQQQQQQQQRVAHKAGTAVPRISTELPSMRRYYEPPLAISEQRAIKFVEAQLGEPLRDDGPILGMEFDPLPPGAFGAPIVTSDQQKRAGRSYDAHLYERLDAKPIKGASRVVHEY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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