当前解析结果
SmilChr02G005366| 统一新 Gene ID | SmilChr02G005366 |
|---|---|
| 名称 | SmilChr02G005366 |
| 描述 | glutamate receptor 3.4-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74352580 - 74356595 / - |
| NCBI Gene ID | LOC131009195 |
|---|---|
| GeneID | 131009195 |
| locus_tag | - |
| NCBI Name | LOC131009195 |
| 原始查询 | LOC131009195 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 3.4-like |
| 产物 | glutamate receptor 3.4-like |
| Arabidopsis | AT1G05200 (GLR3.4)glutamate receptor 3.4 [Source:NCBI gene (formerly Entrezgene);Acc:839268] identity=62.7; qcov=0.945; evalue=0; confidence=high |
| Rice | Os07g0522600 (OsGLR3.7)- identity=56.2; qcov=0.994; evalue=0; confidence=high |
| GO | GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009195 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792430.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792430.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792430.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792430.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792430.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74352792 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B94,C53,C61 |
Chr2:74352844 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr2:74352895 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A25,B104,C15 |
Chr2:74352903 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B130,B79 |
Chr2:74352916 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B104,C15 |
Chr2:74352942 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A18,B126,B67,C26,C72 |
Chr2:74352967 |
C |
CT |
1bp_insertion | stop_gained,frameshift_variant | 7 | A25,B104,B124,B140,C15,C45,C87 |
Chr2:74352972 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B137,B33,B65,B93 |
Chr2:74352975 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A7,B101,C45 |
Chr2:74353022 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:74353095 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:74353148 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | A25,B104,B111,B124,B129,B131,B137,B140,B93,C15,C45,C87 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792430.1PF01094
ANF_receptor 58-412 aa
PF10613
Lig_chan-Glu_bd 490-575 aa
PF00497
SBP_bac_3 527-813 aa
PF00060
Lig_chan 591-846 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792430.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 58 | 412 | 2.3e-90 | 303.9 | Receptor family ligand binding region |
XP_057792430.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 490 | 575 | 4.9e-10 | 40.2 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057792430.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 527 | 813 | 5.2e-12 | 46.4 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057792430.1 |
Pfam | PF00060 |
Lig_chan | Family | 591 | 846 | 2.1e-36 | 125.7 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。