Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005269`

染色体: Chr02 坐标: 73772664-73776786 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005269`
名称	SmilChr02G005269
描述	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73772664 - 73776786 / `-`

ID 对照

NCBI Gene ID	`LOC131009206`
GeneID	`131009206`
locus_tag	`-`
NCBI Name	`LOC131009206`
原始查询	`LOC131009206`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	external alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial-like
产物	external alternative NAD(P)H-ubiquinone oxidoreductase B1%2C mitochondrial-like
Arabidopsis	`AT4G28220` (NDB1) NAD(P)H dehydrogenase B1 [Source:NCBI gene (formerly Entrezgene);Acc:828937] identity=72.7; qcov=0.898; evalue=0; confidence=high
Rice	`Os06g0684000` (P0009H10.17-1) - identity=66.2; qcov=0.997; evalue=0; confidence=high
GO	GO:0003954 (NADH dehydrogenase activity); GO:0005509 (calcium ion binding); GO:0006116 (GO:0006116)
KEGG	smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00070 (Pyr_redox); PF07992 (Pyr_redox_2); PF22366 (NDH2_C)
InterPro	-
eggNOG	-
NR	GeneID:131009206

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057792443.1`
2	Mitochondrion membrane	线粒体膜	1.00000	`XP_057792443.1`
3	Nucleus	细胞核	0.00000	`XP_057792443.1`
4	Chromosome	染色体	0.00000	`XP_057792443.1`
5	Centromere	着丝粒	0.00000	`XP_057792443.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73773284`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:73773308`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A25,B136,B71,C28
`Chr2:73773320`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A13,A24,B77,C27,C9
`Chr2:73773844`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr2:73773916`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B16
`Chr2:73774049`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C33,C42
`Chr2:73774133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B51,B59
`Chr2:73774379`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:73774535`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72
`Chr2:73774536`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C39,D6
`Chr2:73774581`	`AGT`	`A`	2bp_deletion	frameshift_variant	6	A24,B69,C42,C5,C53,C58
`Chr2:73774619`	`TC`	`T`	1bp_deletion	frameshift_variant	3	B21,C55,C87

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792443.1

579 aa

290

579

Pyr_redox_2

Pyr_redox

NDH2_C

PF07992 Pyr_redox_2 58-380 aa PF00070 Pyr_redox 224-304 aa PF22366 NDH2_C 514-575 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792443.1`	Pfam	`PF07992`	Pyr_redox_2	Domain	58	380	3.8e-50	171.7	Pyridine nucleotide-disulphide oxidoreductase
`XP_057792443.1`	Pfam	`PF00070`	Pyr_redox	Domain	224	304	2.3e-11	44.8	Pyridine nucleotide-disulphide oxidoreductase
`XP_057792443.1`	Pfam	`PF22366`	NDH2_C	Domain	514	575	2.3e-16	60.4	NDH2 C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936460.1
AAACATAATTAAGATTGATAAGGAAAAGAAAAAAAAGAGTAAAAACAGGAAAAAGAAAATGAAAATTATGGAGATTATCACATGGGTGTAACTAATTTCTTGCTCAATTATGAGTTTTGATAATGAAATACAGTAACCAACCAGACAAAATGAATCTGGTTGACCTCATTCGCAAACTACCCAAGAAAAGGGGAAAAGTTTTGCCCTTTTATGGACTGTCACTACAAACTCAACTGAATCTTGTGGGGTTTTTTTCCTCA...

CDS

1 records

下载 CDS FASTA

LOC131009206
ATGAGATTTTTCTCACATTTCAGCAAGATTCTGCATAGCCATCCTACTTCAGCCAAGCTTCTGGTTCTTGCTTCTCTCAGCGGCGGAGGAGGCCTCGTTGCCTATGCAGATCTTCCATCAGATAAGGAGAAACAAGGTCTTCTTGTACATGATCACGGGGAAGCTCGGAAGAAAAAAGTCTTGGTGCTTGGGACGGGATGGGCCGGTATTAGCTTCCTGAAAGATCTGGATATCTCATCCTACGATGTGCAGGTGGTCTC...

Protein

1 records

下载 Protein FASTA

XP_057792443.1
MRFFSHFSKILHSHPTSAKLLVLASLSGGGGLVAYADLPSDKEKQGLLVHDHGEARKKKVLVLGTGWAGISFLKDLDISSYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIVKKRNGEIKFWEAECLKVDAMNKKVICRSSANENLPGNNEFSLEYDYLVIAVGAQVNTFNTPGVSENCYFLKEVEDAQSIRRAVIDCFEKAVLPDLTEEERKINLHFVIVGGGPTGVEFAAELHDFIYEDLVKIYPSVKDLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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