当前解析结果
SmilChr02G005288| 统一新 Gene ID | SmilChr02G005288 |
|---|---|
| 名称 | SmilChr02G005288 |
| 描述 | external alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73894823 - 73898453 / + |
| NCBI Gene ID | LOC131009209 |
|---|---|
| GeneID | 131009209 |
| locus_tag | - |
| NCBI Name | LOC131009209 |
| 原始查询 | LOC131009209 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | external alternative NAD(P)H-ubiquinone oxidoreductase B4, mitochondrial-like |
| 产物 | external alternative NAD(P)H-ubiquinone oxidoreductase B4%2C mitochondrial-like |
| Arabidopsis | AT2G20800 (NDB4)NAD(P)H dehydrogenase B4 [Source:NCBI gene (formerly Entrezgene);Acc:816609] identity=68.9; qcov=1.01; evalue=0; confidence=high |
| Rice | Os05g0331200- identity=70.5; qcov=0.912; evalue=0; confidence=high |
| GO | GO:0003954 (NADH dehydrogenase activity); GO:0005509 (calcium ion binding); GO:0006116 (GO:0006116) |
| KEGG | smil00190 (Oxidative phosphorylation - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00070 (Pyr_redox); PF07992 (Pyr_redox_2); PF22366 (NDH2_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009209 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057792446.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057792446.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.60000 | XP_057792446.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792446.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792446.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73895874 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | B107 |
Chr2:73895874 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:73895889 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A4,B125 |
Chr2:73896060 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B41,B69,C82 |
Chr2:73896302 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B43 |
Chr2:73896336 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A18,B129,C60 |
Chr2:73896357 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B111 |
Chr2:73896369 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C47 |
Chr2:73896390 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B111,B117,C74 |
Chr2:73896401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B36,B38,B39 |
Chr2:73896420 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A15,B36,B38,B39 |
Chr2:73896425 |
GCA |
G |
2bp_deletion | frameshift_variant | 2 | B111,B117 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792446.1PF07992
Pyr_redox_2 58-381 aa
PF00070
Pyr_redox 224-306 aa
PF22366
NDH2_C 512-573 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792446.1 |
Pfam | PF07992 |
Pyr_redox_2 | Domain | 58 | 381 | 5.7e-57 | 194.1 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057792446.1 |
Pfam | PF00070 |
Pyr_redox | Domain | 224 | 306 | 3.7e-13 | 50.5 | Pyridine nucleotide-disulphide oxidoreductase |
XP_057792446.1 |
Pfam | PF22366 |
NDH2_C | Domain | 512 | 573 | 3.6e-15 | 56.6 | NDH2 C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。