Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005347`

染色体: Chr02 坐标: 74283838-74287538 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005347`
名称	SmilChr02G005347
描述	histone-lysine N-methyltransferase ATXR2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74283838 - 74287538 / `+`

ID 对照

NCBI Gene ID	`LOC131009225`
GeneID	`131009225`
locus_tag	`-`
NCBI Name	`LOC131009225`
原始查询	`LOC131009225`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	histone-lysine N-methyltransferase ATXR2
产物	histone-lysine N-methyltransferase ATXR2
Arabidopsis	`AT3G21820` (ATXR2) histone-lysine N-methyltransferase ATXR2 [Source:NCBI gene (formerly Entrezgene);Acc:821736] identity=65.5; qcov=0.975; evalue=0; confidence=high
Rice	`Os04g0629100` (OsSET21) - identity=61.4; qcov=0.966; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0008168 (methyltransferase activity)
KEGG	-
Pfam	PF00856 (SET); PF01753 (zf-MYND)
InterPro	-
eggNOG	-
NR	GeneID:131009225

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792471.1`
2	Nucleus	细胞核	0.80000	`XP_057792471.1`
3	Cytoplasm	细胞质	0.80000	`XP_057792472.1`
4	Chromosome	染色体	0.00000	`XP_057792471.1`
5	Centromere	着丝粒	0.00000	`XP_057792471.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74283996`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B118,B26
`Chr2:74284155`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B101,C58,D1,D6
`Chr2:74284562`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B51,D4
`Chr2:74284662`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C38,C79
`Chr2:74284681`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C38,C79
`Chr2:74284733`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B49,B60
`Chr2:74284769`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B25,B61
`Chr2:74285013`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C77
`Chr2:74285484`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:74285552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:74286005`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B8,C20,C77
`Chr2:74286008`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B119,D10

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792471.1

467 aa

234

467

zf-MYND

SET

PF01753 zf-MYND 166-193 aa PF00856 SET 354-436 aa

XP_057792472.1

437 aa

218

437

zf-MYND

SET

PF01753 zf-MYND 136-163 aa PF00856 SET 324-406 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792471.1`	Pfam	`PF01753`	zf-MYND	Domain	166	193	3.8e-07	30.8	MYND finger
`XP_057792471.1`	Pfam	`PF00856`	SET	Family	354	436	3.6e-13	50.6	SET domain
`XP_057792472.1`	Pfam	`PF01753`	zf-MYND	Domain	136	163	3.5e-07	30.9	MYND finger
`XP_057792472.1`	Pfam	`PF00856`	SET	Family	324	406	8.7e-13	49.4	SET domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936488.1
ATTTTTATTTTTTTTAATGGAGGCGCAATATAAGCGGAGTTGCAGCGACGAGCAGAAGCAGACGGAAAAGCTGTGAGAGTGTTGAAATGGAGGCTTCAAGCTGCCCAATCGACGCCCAATTTTCCGAAAAAATCTCGATTCTTCTCAGCCCTCCGCCGCTCCCACAAGTTCAGGAATACTTTGAAGAGCTTGTTTCTGAAAGGAAATGTAATGGAATCAAAGTGAAATTAGATGGAGAGCATGGAAAAGGGGTTTATAGC...

XM_057936489.1
GAATACTTTGAAGAGCTTGTTTCTGAAAGGAAATGTAATGGAATCAAAGTGAAATTAGATGGAGAGCATGGAAAAGATTTTGATGTATGTGATGGTGGAATGGTGTGATGCTGTGGTGAAAATAACTGTAGGGGTTTATAGCGAGGTAGATTTTCGAGAAGATGACCTAATTTTGAAGGATCAAATACTTGTTGGTGCCCAACATTCATCTAATAAGGTCAATTGTATGGTGTGTAGTTTCTGCTTCCAATTCATTGGCT...

CDS

2 records

下载 CDS FASTA

LOC131009225
ATGGAGGCTTCAAGCTGCCCAATCGACGCCCAATTTTCCGAAAAAATCTCGATTCTTCTCAGCCCTCCGCCGCTCCCACAAGTTCAGGAATACTTTGAAGAGCTTGTTTCTGAAAGGAAATGTAATGGAATCAAAGTGAAATTAGATGGAGAGCATGGAAAAGGGGTTTATAGCGAGGTAGATTTTCGAGAAGATGACCTAATTTTGAAGGATCAAATACTTGTTGGTGCCCAACATTCATCTAATAAGGTCAATTGTAT...

LOC131009225
ATGGAGAGCATGGAAAAGATTTTGATGTATGTGATGGTGGAATGGTGTGATGCTGTGGTGAAAATAACTGTAGGGGTTTATAGCGAGGTAGATTTTCGAGAAGATGACCTAATTTTGAAGGATCAAATACTTGTTGGTGCCCAACATTCATCTAATAAGGTCAATTGTATGGTGTGTAGTTTCTGCTTCCAATTCATTGGCTCGATAGAGCTTCAAATTGGGAGGAAGTTATATTTGGAAGAGTTAGGGATCTCTGCAGA...

Protein

2 records

下载 Protein FASTA

XP_057792471.1
MEASSCPIDAQFSEKISILLSPPPLPQVQEYFEELVSERKCNGIKVKLDGEHGKGVYSEVDFREDDLILKDQILVGAQHSSNKVNCMVCSFCFQFIGSIELQIGRKLYLEELGISADGECGSSGGMECSSSSEKTRLSHTTIQSLMDGCLRLPYSENFPLPPVFPCLGGCKEAYYCSKSCAQADWDSFHSLLCIGHGSSSPNREALLKFMKHADETNDIFIPAAKVISSTILRYRKLKAARVEQQGKHVTSDPHDNCIFP...

XP_057792472.1
MESMEKILMYVMVEWCDAVVKITVGVYSEVDFREDDLILKDQILVGAQHSSNKVNCMVCSFCFQFIGSIELQIGRKLYLEELGISADGECGSSGGMECSSSSEKTRLSHTTIQSLMDGCLRLPYSENFPLPPVFPCLGGCKEAYYCSKSCAQADWDSFHSLLCIGHGSSSPNREALLKFMKHADETNDIFIPAAKVISSTILRYRKLKAARVEQQGKHVTSDPHDNCIFPLLLEAWKPVSMGFKRRWWDCIALPDDVDSC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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