当前解析结果
SmilChr02G005250| 统一新 Gene ID | SmilChr02G005250 |
|---|---|
| 名称 | SmilChr02G005250 |
| 描述 | wax ester synthase/diacylglycerol acyltransferase 4-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73646694 - 73649996 / + |
| NCBI Gene ID | LOC131009227 |
|---|---|
| GeneID | 131009227 |
| locus_tag | - |
| NCBI Name | LOC131009227 |
| 原始查询 | LOC131009227 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wax ester synthase/diacylglycerol acyltransferase 4-like |
| 产物 | wax ester synthase/diacylglycerol acyltransferase 4-like |
| Arabidopsis | AT3G49190 (AT3G49190)O-acyltransferase (WSD1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824080] identity=28.3; qcov=1.05; evalue=4.6e-56; confidence=low |
| Rice | Os01g0681000- identity=31.1; qcov=1.04; evalue=1.24e-63; confidence=low |
| GO | GO:0004144 (diacylglycerol O-acyltransferase activity); GO:0005886 (plasma membrane); GO:0019432 (triglyceride biosynthetic process); GO:0047196 (long-chain-alcohol O-fatty-acyltransferase activity) |
| KEGG | - |
| Pfam | PF03007 (WS_DGAT_cat); PF06974 (WS_DGAT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009227 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792474.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057792474.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792474.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792474.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792474.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73646718 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B111,B50 |
Chr2:73646761 |
A |
AAT |
2bp_insertion | frameshift_variant | 1 | B104 |
Chr2:73646761 |
A |
AAT |
2bp_insertion | CDS_variant | 1 | B104 |
Chr2:73646765 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B130,B15,B48,B88,C49 |
Chr2:73646773 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B130,B48,B88,C37,C49 |
Chr2:73646779 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B19,B48,B88,C37 |
Chr2:73646826 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C14 |
Chr2:73646887 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B30 |
Chr2:73647077 |
AC |
A |
1bp_deletion | frameshift_variant | 1 | B2 |
Chr2:73647077 |
AC |
A |
1bp_deletion | CDS_variant | 1 | B2 |
Chr2:73647078 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B24,B53,B55 |
Chr2:73647097 |
GGC |
G |
2bp_deletion | frameshift_variant | 1 | B2 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792474.1PF03007
WS_DGAT_cat 69-259 aa
PF06974
WS_DGAT_C 312-457 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792474.1 |
Pfam | PF03007 |
WS_DGAT_cat | Domain | 69 | 259 | 3.2e-12 | 47.5 | Wax ester synthase/diacylglycerol acyltransferase catalytic domain |
XP_057792474.1 |
Pfam | PF06974 |
WS_DGAT_C | Domain | 312 | 457 | 8.6e-37 | 127.1 | WS/DGAT C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。