当前解析结果
SmilChr02G005240| 统一新 Gene ID | SmilChr02G005240 |
|---|---|
| 名称 | SmilChr02G005240 |
| 描述 | wax ester synthase/diacylglycerol acyltransferase 4-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73572201 - 73575570 / - |
| NCBI Gene ID | LOC131009228 |
|---|---|
| GeneID | 131009228 |
| locus_tag | - |
| NCBI Name | LOC131009228 |
| 原始查询 | LOC131009228 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | wax ester synthase/diacylglycerol acyltransferase 4-like |
| 产物 | wax ester synthase/diacylglycerol acyltransferase 4-like |
| Arabidopsis | AT3G49190 (AT3G49190)O-acyltransferase (WSD1-like) family protein [Source:NCBI gene (formerly Entrezgene);Acc:824080] identity=29.1; qcov=0.994; evalue=2.33e-55; confidence=low |
| Rice | Os05g0556300- identity=27.9; qcov=1.05; evalue=1.68e-58; confidence=low |
| GO | GO:0004144 (diacylglycerol O-acyltransferase activity); GO:0005886 (plasma membrane); GO:0019432 (triglyceride biosynthetic process); GO:0047196 (long-chain-alcohol O-fatty-acyltransferase activity) |
| KEGG | - |
| Pfam | PF03007 (WS_DGAT_cat); PF06974 (WS_DGAT_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009228 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792475.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057792475.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792475.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792475.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792475.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73572814 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr2:73572892 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:73573437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:73573545 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A4,A5,B89,C60,C67 |
Chr2:73573578 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B131 |
Chr2:73573653 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C49 |
Chr2:73574327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,C30,C35 |
Chr2:73574344 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr2:73574356 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B80,B82,D5 |
Chr2:73574442 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B106,B5,B73,C49 |
Chr2:73574599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
Chr2:73574643 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792475.1PF03007
WS_DGAT_cat 100-258 aa
PF06974
WS_DGAT_C 311-456 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792475.1 |
Pfam | PF03007 |
WS_DGAT_cat | Domain | 100 | 258 | 5.7e-13 | 50.0 | Wax ester synthase/diacylglycerol acyltransferase catalytic domain |
XP_057792475.1 |
Pfam | PF06974 |
WS_DGAT_C | Domain | 311 | 456 | 2.9e-36 | 125.4 | WS/DGAT C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。