当前解析结果
SmilChr02G005308| 统一新 Gene ID | SmilChr02G005308 |
|---|---|
| 名称 | SmilChr02G005308 |
| 描述 | malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 73991125 - 73993548 / - |
| NCBI Gene ID | LOC131009230 |
|---|---|
| GeneID | 131009230 |
| locus_tag | - |
| NCBI Name | LOC131009230 |
| 原始查询 | LOC131009230 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase-like |
| 产物 | malonyl-coenzyme:anthocyanin 5-O-glucoside-6'''-O-malonyltransferase-like |
| Arabidopsis | AT1G03940 (AT1G03940)HXXXD-type acyl-transferase family protein [Source:NCBI gene (formerly Entrezgene);Acc:839366] identity=32.6; qcov=1.02; evalue=2.09e-71; confidence=low |
| Rice | Os07g0414000- identity=28.7; qcov=1.03; evalue=4.73e-46; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | PF02458 (Transferase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009230 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057792477.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057792477.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792477.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792477.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792477.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:73991234 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B46,C62 |
Chr2:73991283 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,B46,C62 |
Chr2:73991303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,C62 |
Chr2:73991304 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,D1 |
Chr2:73991306 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B26 |
Chr2:73991374 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
Chr2:73991381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B118,B26 |
Chr2:73991382 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C11,C69 |
Chr2:73991393 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B129,D1 |
Chr2:73991397 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B137,C24,C30 |
Chr2:73991579 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B104,B46,C30 |
Chr2:73991651 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B137 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792477.1PF02458
Transferase 22-449 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792477.1 |
Pfam | PF02458 |
Transferase | Family | 22 | 449 | 5.7e-32 | 111.6 | Transferase family |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。