Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005231`

染色体: Chr02 坐标: 73504800-73508275 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005231`
名称	SmilChr02G005231
描述	tyrosine aminotransferase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73504800 - 73508275 / `-`

ID 对照

NCBI Gene ID	`LOC131009245`
GeneID	`131009245`
locus_tag	`-`
NCBI Name	`LOC131009245`
原始查询	`LOC131009245`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	tyrosine aminotransferase-like
产物	tyrosine aminotransferase-like
Arabidopsis	`AT5G36160` (AT5G36160) Tyrosine transaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:833613] identity=61.7; qcov=0.993; evalue=0; confidence=high
Rice	`Os02g0302700` (OsNAAT2) - identity=60.7; qcov=0.998; evalue=0; confidence=high
GO	GO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131009245

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057792499.1`
2	Cytoplasm	细胞质	0.40000	`XP_057792499.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057792499.1`
4	Nucleus	细胞核	0.00000	`XP_057792499.1`
5	Chromosome	染色体	0.00000	`XP_057792499.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73505403`	`T`	`TGA`	2bp_insertion	frameshift_variant	1	B100
`Chr2:73505403`	`T`	`TGA`	2bp_insertion	CDS_variant	1	B100
`Chr2:73506680`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B33,B66,B70,C48,D2
`Chr2:73506784`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:73506820`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B115,B23,B49,C45
`Chr2:73507022`	`T`	`TA`	1bp_insertion	frameshift_variant	1	B47
`Chr2:73507022`	`T`	`TA`	1bp_insertion	CDS_variant	1	B47
`Chr2:73507086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A21,B69,C72,D9
`Chr2:73507158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B33,B66,B70,C48,D2
`Chr2:73507841`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:73507911`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B34,C35
`Chr2:73507984`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792499.1

421 aa

210

421

Aminotran_1_2

PF00155 Aminotran_1_2 45-403 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792499.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	45	403	4.1e-52	178.3	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936516.1
TATATCATATTCTACTTATAAAAGCAAATTCGAAATTTAAAACCACAAGAAATAAAAGGAAAAAAATGACAAAAAAGCAAAAGACGTGAGGAAATTTTTCCCTTAAAAAGAAGAAAAAAAGACGTGAGGAAGTTATAAACTTACAAACGCAGACATTACTGAAGCAGTGGTCACCTTTCCTCCTTCGCTACATGCCAAATTCTACTGAGAGAGAGAGAAAGGGAGCTGTCGATGGAGAATGGAGGTTCGGCGGCGGCGCG...

CDS

1 records

下载 CDS FASTA

LOC131009245
ATGGAGAATGGAGGTTCGGCGGCGGCGCGGTGGCGTTTCGAGGGGAACGAGCGGCTCATCCTGGCCGGAGGAGTCACCGTTAGGGGCGTGCTCAACACTGTTATTGGAAATCTCGACGGAAACGATACCAGACCGGTGATTCCGCTCGGCCACGGAGATCCATCCGCCTTCCCTTCCTTCCGCACCTCTCCTTTTGCGGAGGACGCCGTCTGCTCCGCGGTCCGCTCCACCAAGTTCAACGGTTACTCCTCCACCGTCGG...

Protein

1 records

下载 Protein FASTA

XP_057792499.1
MENGGSAAARWRFEGNERLILAGGVTVRGVLNTVIGNLDGNDTRPVIPLGHGDPSAFPSFRTSPFAEDAVCSAVRSTKFNGYSSTVGIPAARSAVAEYLSKDLPYKLSPDDVFLTIGCTQALEAIVTVLARPGANLLLPRPGFPYYEARAGFCSLEVRHFDLLPEQDWEVDLASVEALADANTVAMVIINPGNPCGNVFKYEHLKKVAETARKLGILVISDEVYDHLTFGSNPFVPMGVFASIAPILTLGSISKRWIVPG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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