Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005228`

染色体: Chr02 坐标: 73479839-73483918 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005228`
名称	SmilChr02G005228
描述	probable aminotransferase TAT2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73479839 - 73483918 / `-`

ID 对照

NCBI Gene ID	`LOC131009249`
GeneID	`131009249`
locus_tag	`-`
NCBI Name	`LOC131009249`
原始查询	`LOC131009249`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable aminotransferase TAT2
产物	probable aminotransferase TAT2
Arabidopsis	`AT5G53970` (TAT7) Tyrosine transaminase family protein [Source:NCBI gene (formerly Entrezgene);Acc:835480] identity=52.7; qcov=0.99; evalue=2.69e-158; confidence=high
Rice	`Os02g0302700` (OsNAAT2) - identity=50.9; qcov=0.959; evalue=6.59e-156; confidence=high
GO	GO:0006520 (amino acid metabolic process); GO:0008483 (transaminase activity); GO:0009058 (biosynthetic process); GO:0030170 (pyridoxal phosphate binding)
KEGG	smil00130 (Ubiquinone and other terpenoid-quinone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00270 (Cysteine and methionine metabolism - Salvia miltiorrhiza (redroot sage)); smil00350 (Tyrosine metabolism - Salvia miltiorrhiza (redroot sage)); smil00360 (Phenylalanine metabolism - Salvia miltiorrhiza (redroot sage)); smil00400 (Phenylalanine, tyrosine and tryptophan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00950 (Isoquinoline alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil00960 (Tropane, piperidine and pyridine alkaloid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF00155 (Aminotran_1_2)
InterPro	-
eggNOG	-
NR	GeneID:131009249

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792503.1`
2	Cytoplasm	细胞质	0.60000	`XP_057792503.1`
3	Peroxisome	过氧化物酶体	0.40000	`XP_057792503.1`
4	Nucleus	细胞核	0.00000	`XP_057792503.1`
5	Chromosome	染色体	0.00000	`XP_057792503.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73480115`	`G`	`GT`	1bp_insertion	frameshift_variant	132	A10,A15,A18,A19,A20,A22,A23,A24,A3,B1,B10,B100,B103,B105,B11,B110,B111,B112,B113,B118,B119,B122,B123,B125,B126,B127,B129,B13,B130,B131,B132,B134,B135,B137,B138,B139,B140,B19,B23,B26,B27,B28,B3,B31,B32,B33,B34,B35,B37,B41,B43,B45,B47,B5,B51,B53,B55,B56,B58,B59,B6,B62,B63,B64,B65,B66,B67,B69,B7,B72,B73,B74,B76,B77,B8,B81,B83,B86,B87,B9,B93,B94,B95,B96,B97,B98,C10,C11,C13,C18,C20,C24,C26,C28,C31,C32,C34,C38,C4,C41,C43,C44,C48,C5,C51,C52,C56,C57,C63,C65,C67,C68,C69,C7,C70,C72,C73,C75,C76,C78,C79,C8,C80,C83,C84,C85,C86,C9,D11,D2,D3,D4
`Chr2:73480138`	`T`	`TG`	1bp_insertion	frameshift_variant	1	A14
`Chr2:73480138`	`T`	`TG`	1bp_insertion	CDS_variant	1	A14
`Chr2:73480789`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B93
`Chr2:73480919`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B140,B37
`Chr2:73480976`	`TTC`	`T`	2bp_deletion	frameshift_variant	7	B102,B113,B119,C11,C47,C69,D5
`Chr2:73481160`	`A`	`ACT`	2bp_insertion	frameshift_variant	22	A16,A25,A7,A8,B132,B136,B19,B35,B36,B56,B74,B75,B86,B96,C17,C20,C39,C46,C49,C52,C80,C87
`Chr2:73481173`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A24,B107,B126,C53
`Chr2:73481606`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B122,C46
`Chr2:73481634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A6,B30,B79,C44,C50
`Chr2:73481642`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C14
`Chr2:73481650`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792503.1

412 aa

206

412

Aminotran_1_2

PF00155 Aminotran_1_2 35-400 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792503.1`	Pfam	`PF00155`	Aminotran_1_2	Domain	35	400	9.7e-59	200.1	Aminotransferase class I and II

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936520.1
GAAAGAAAGAAAAAAAAAAAAAAACAGTCCCAATTAGTAATAATTATTCATTGAGAACTGAAAATTATATAAAATCATAATCATGAAATCATCAATATCCTTACTTACATAAACCGTGATTCGAATATGGTTAACCCTAATTAAAATTACTAGTACTAAATAAAACTGAAAGCTAAAATTGAGATCATAATTTTTACGTTAAAAAAGGTTTTTTGATCTCAATCCTTAGCACATACACATAAATATTAAATCTAAAATTT...

CDS

1 records

下载 CDS FASTA

LOC131009249
ATGGAGAGCAGTTTGAAGAATGAGAAAGAGGGTAGGGTGAGTGTGACAAATAGAGATCTGATAAAGAAAATAAGTGAAAATCTCAACAAAAACGATGCTAGATCAGTTATCAATCTTGGAAATGGAGATCCAACTCCATATCCAAGTTTCCAAACAACCCTCGTTGCAGAAGAAGCCCTTCTCAACTCCCTTCACTCCAACTCCTTCAATGGCTACCCTCCTCCTTTTGGTCTTCCTGCAGCTAGGAGGGCAATTGCGAA...

Protein

1 records

下载 Protein FASTA

XP_057792503.1
MESSLKNEKEGRVSVTNRDLIKKISENLNKNDARSVINLGNGDPTPYPSFQTTLVAEEALLNSLHSNSFNGYPPPFGLPAARRAIAKHLSGDLPHVLLEEDVFITSGASQAIELLLTVLARPGGNILLPRPVFPLYKARAELVGLEVREFDLLPYRDWEADLDAVEALADDETIAMVVINPGYPTGNLFTLDHMQKIAETAQRKGIIVIADEVYRHIVFGNQEFIPMGIFGSLTPVLTVGSLSKRWLIPGWRLGWIAASD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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