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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005290

染色体: Chr02 坐标: 73898662-73900807 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005290
名称SmilChr02G005290
描述pentatricopeptide repeat-containing protein At1g11900
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向73898662 - 73900807 / -

ID 对照

NCBI Gene IDLOC131009261
GeneID131009261
locus_tag-
NCBI NameLOC131009261
原始查询LOC131009261

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At1g11900
产物pentatricopeptide repeat-containing protein At1g11900
ArabidopsisAT1G11900 (AT1G11900)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:837738]
identity=41.1; qcov=0.792; evalue=5.37e-65; confidence=medium
RiceOs05g0481800
-
identity=42.9; qcov=0.786; evalue=1.64e-68; confidence=medium
GOGO:0005515 (protein binding)
KEGG-
PfamPF01535 (PPR); PF12854 (PPR_1); PF13041 (PPR_2); PF13812 (PPR_3); PF17177 (PPR_long); PF23276 (TPR_24)
InterPro-
eggNOG-
NRGeneID:131009261

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057792527.1
2 Chloroplast 叶绿体 0.20000 XP_057792527.1
3 Nucleus 细胞核 0.00000 XP_057792527.1
4 Chromosome 染色体 0.00000 XP_057792527.1
5 Centromere 着丝粒 0.00000 XP_057792527.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:73899420 C T EMS_canonical_SNV CDS_variant 1 D5
Chr2:73899459 C T EMS_canonical_SNV CDS_variant 2 C30,C40
Chr2:73899550 G A EMS_canonical_SNV CDS_variant 1 B13
Chr2:73899595 C T EMS_canonical_SNV CDS_variant 2 B70,C47
Chr2:73899610 G A EMS_canonical_SNV CDS_variant 1 D5
Chr2:73899655 G A EMS_canonical_SNV CDS_variant 4 A15,B36,B38,B39
Chr2:73899670 C T EMS_canonical_SNV CDS_variant 3 C30,C40,D10
Chr2:73899744 C T EMS_canonical_SNV CDS_variant 2 C30,C40
Chr2:73899747 C T EMS_canonical_SNV CDS_variant 2 C30,C40
Chr2:73899845 C T EMS_canonical_SNV CDS_variant 4 B28,B3,B42,B43
Chr2:73900023 C T EMS_canonical_SNV CDS_variant 2 C30,C40
Chr2:73900071 C T EMS_canonical_SNV CDS_variant 2 C30,C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792527.1
341 aa
N
1
170
341
TPR_24
PPR
PPR_2
PPR_3
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
C
PF23276 TPR_24 164-292 aa PF01535 PPR 165-193 aa PF13041 PPR_2 165-204 aa PF13812 PPR_3 166-208 aa PF17177 PPR_long 179-319 aa PF13812 PPR_3 184-241 aa PF12854 PPR_1 192-224 aa PF13041 PPR_2 195-242 aa PF01535 PPR 198-227 aa PF12854 PPR_1 227-258 aa PF13041 PPR_2 230-277 aa PF01535 PPR 233-263 aa PF13812 PPR_3 255-309 aa PF12854 PPR_1 261-294 aa PF01535 PPR 269-296 aa
XP_057792528.1
341 aa
N
1
170
341
TPR_24
PPR
PPR_2
PPR_3
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
C
PF23276 TPR_24 164-292 aa PF01535 PPR 165-193 aa PF13041 PPR_2 165-204 aa PF13812 PPR_3 166-208 aa PF17177 PPR_long 179-319 aa PF13812 PPR_3 184-241 aa PF12854 PPR_1 192-224 aa PF13041 PPR_2 195-242 aa PF01535 PPR 198-227 aa PF12854 PPR_1 227-258 aa PF13041 PPR_2 230-277 aa PF01535 PPR 233-263 aa PF13812 PPR_3 255-309 aa PF12854 PPR_1 261-294 aa PF01535 PPR 269-296 aa
XP_057792529.1
341 aa
N
1
170
341
TPR_24
PPR
PPR_2
PPR_3
PPR_long
PPR_3
PPR_1
PPR_2
PPR
PPR_1
PPR_2
PPR
PPR_3
PPR_1
PPR
C
PF23276 TPR_24 164-292 aa PF01535 PPR 165-193 aa PF13041 PPR_2 165-204 aa PF13812 PPR_3 166-208 aa PF17177 PPR_long 179-319 aa PF13812 PPR_3 184-241 aa PF12854 PPR_1 192-224 aa PF13041 PPR_2 195-242 aa PF01535 PPR 198-227 aa PF12854 PPR_1 227-258 aa PF13041 PPR_2 230-277 aa PF01535 PPR 233-263 aa PF13812 PPR_3 255-309 aa PF12854 PPR_1 261-294 aa PF01535 PPR 269-296 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792527.1 Pfam PF23276 TPR_24 Repeat 164 292 2.5e-12 47.5 Pentatricopeptide repeat-containing protein
XP_057792527.1 Pfam PF01535 PPR Repeat 165 193 1.2e-30 104.3 PPR repeat
XP_057792527.1 Pfam PF13041 PPR_2 Repeat 165 204 1.3e-39 134.8 PPR repeat family
XP_057792527.1 Pfam PF13812 PPR_3 Repeat 166 208 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792527.1 Pfam PF17177 PPR_long Repeat 179 319 1.6e-12 48.0 Pentacotripeptide-repeat region of PRORP
XP_057792527.1 Pfam PF13812 PPR_3 Repeat 184 241 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792527.1 Pfam PF12854 PPR_1 Repeat 192 224 1.8e-29 101.9 PPR repeat
XP_057792527.1 Pfam PF13041 PPR_2 Repeat 195 242 1.3e-39 134.8 PPR repeat family
XP_057792527.1 Pfam PF01535 PPR Repeat 198 227 1.2e-30 104.3 PPR repeat
XP_057792527.1 Pfam PF12854 PPR_1 Repeat 227 258 1.8e-29 101.9 PPR repeat
XP_057792527.1 Pfam PF13041 PPR_2 Repeat 230 277 1.3e-39 134.8 PPR repeat family
XP_057792527.1 Pfam PF01535 PPR Repeat 233 263 1.2e-30 104.3 PPR repeat
XP_057792527.1 Pfam PF13812 PPR_3 Repeat 255 309 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792527.1 Pfam PF12854 PPR_1 Repeat 261 294 1.8e-29 101.9 PPR repeat
XP_057792527.1 Pfam PF01535 PPR Repeat 269 296 1.2e-30 104.3 PPR repeat
XP_057792528.1 Pfam PF23276 TPR_24 Repeat 164 292 2.5e-12 47.5 Pentatricopeptide repeat-containing protein
XP_057792528.1 Pfam PF01535 PPR Repeat 165 193 1.2e-30 104.3 PPR repeat
XP_057792528.1 Pfam PF13041 PPR_2 Repeat 165 204 1.3e-39 134.8 PPR repeat family
XP_057792528.1 Pfam PF13812 PPR_3 Repeat 166 208 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792528.1 Pfam PF17177 PPR_long Repeat 179 319 1.6e-12 48.0 Pentacotripeptide-repeat region of PRORP
XP_057792528.1 Pfam PF13812 PPR_3 Repeat 184 241 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792528.1 Pfam PF12854 PPR_1 Repeat 192 224 1.8e-29 101.9 PPR repeat
XP_057792528.1 Pfam PF13041 PPR_2 Repeat 195 242 1.3e-39 134.8 PPR repeat family
XP_057792528.1 Pfam PF01535 PPR Repeat 198 227 1.2e-30 104.3 PPR repeat
XP_057792528.1 Pfam PF12854 PPR_1 Repeat 227 258 1.8e-29 101.9 PPR repeat
XP_057792528.1 Pfam PF13041 PPR_2 Repeat 230 277 1.3e-39 134.8 PPR repeat family
XP_057792528.1 Pfam PF01535 PPR Repeat 233 263 1.2e-30 104.3 PPR repeat
XP_057792528.1 Pfam PF13812 PPR_3 Repeat 255 309 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792528.1 Pfam PF12854 PPR_1 Repeat 261 294 1.8e-29 101.9 PPR repeat
XP_057792528.1 Pfam PF01535 PPR Repeat 269 296 1.2e-30 104.3 PPR repeat
XP_057792529.1 Pfam PF23276 TPR_24 Repeat 164 292 2.5e-12 47.5 Pentatricopeptide repeat-containing protein
XP_057792529.1 Pfam PF01535 PPR Repeat 165 193 1.2e-30 104.3 PPR repeat
XP_057792529.1 Pfam PF13041 PPR_2 Repeat 165 204 1.3e-39 134.8 PPR repeat family
XP_057792529.1 Pfam PF13812 PPR_3 Repeat 166 208 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792529.1 Pfam PF17177 PPR_long Repeat 179 319 1.6e-12 48.0 Pentacotripeptide-repeat region of PRORP
XP_057792529.1 Pfam PF13812 PPR_3 Repeat 184 241 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792529.1 Pfam PF12854 PPR_1 Repeat 192 224 1.8e-29 101.9 PPR repeat
XP_057792529.1 Pfam PF13041 PPR_2 Repeat 195 242 1.3e-39 134.8 PPR repeat family
XP_057792529.1 Pfam PF01535 PPR Repeat 198 227 1.2e-30 104.3 PPR repeat
XP_057792529.1 Pfam PF12854 PPR_1 Repeat 227 258 1.8e-29 101.9 PPR repeat
XP_057792529.1 Pfam PF13041 PPR_2 Repeat 230 277 1.3e-39 134.8 PPR repeat family
XP_057792529.1 Pfam PF01535 PPR Repeat 233 263 1.2e-30 104.3 PPR repeat
XP_057792529.1 Pfam PF13812 PPR_3 Repeat 255 309 1.6e-27 96.0 Pentatricopeptide repeat domain
XP_057792529.1 Pfam PF12854 PPR_1 Repeat 261 294 1.8e-29 101.9 PPR repeat
XP_057792529.1 Pfam PF01535 PPR Repeat 269 296 1.2e-30 104.3 PPR repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057936545.1
AAAAAAAAAAAAAAAATCTTAAACCCCTTTTGAAAAATAAAAATCTTAAACCCGAGATTATTTCTTGCCACTCTGATGCTGCTACGCCACCACAGCAGCCGCCGCCGCCACGTCGGCGCCACCAGGCAAATGGAAATGGGCACCGACAATTATGAGAGCACGATTATACCAAAAGGAGCCGTTTACACCTCCAGTCTCCTGTAAACTTCAAAACGCTGCTGTATCCGCATCTCCATACTCTTCTTCTTTGGCAGAGCTGC...
XM_057936546.1
AAAAAAAAAAAAAAATCTTAAACCCCTTTTGAAAAATAAAAATCTTAAACCCGAGATTATTTCTTGCCACTCTGATGCTGCTACGCCACCACAGCAGCCGCCGCCGCCACGTCGGCGCCACCAGGCAAATGGAAATGGGCACCGACAATTATGAGAGCACGATTATACCAAAAGGAGCCGTTTACACCTCCAGTCTCCTGTAAACTTCAAAACGCTGCTGTATCCGCATCTCCATACTCTTCTTCTTTGGCAGAGCTGCG...

CDS

3 records

下载 CDS FASTA
LOC131009261
ATGGCCGGATTTTTGGTGAAAAGCTTTAGGGTTTCTGCATTATCTGTTTTGAGTAATTCAGTAGGAAGTCGGTTATCGTTATCGACTCAAATCCCCTCTGAAGAAACCACTGATGAAATCCTGAATCAAATACTTGCTGCTGAGGAGGACTCTCCTTCTTCTTCTAGGGAAGAACTTTGTGTAGGTTATATTAGGAAGCTATGTGCTGCTGGAGATTTCATGGTAGCAGCTAGGATCCCACGATTTTTACGCAATAAGCA...
LOC131009261
ATGGCCGGATTTTTGGTGAAAAGCTTTAGGGTTTCTGCATTATCTGTTTTGAGTAATTCAGTAGGAAGTCGGTTATCGTTATCGACTCAAATCCCCTCTGAAGAAACCACTGATGAAATCCTGAATCAAATACTTGCTGCTGAGGAGGACTCTCCTTCTTCTTCTAGGGAAGAACTTTGTGTAGGTTATATTAGGAAGCTATGTGCTGCTGGAGATTTCATGGTAGCAGCTAGGATCCCACGATTTTTACGCAATAAGCA...

Protein

3 records

下载 Protein FASTA
XP_057792527.1
MAGFLVKSFRVSALSVLSNSVGSRLSLSTQIPSEETTDEILNQILAAEEDSPSSSREELCVGYIRKLCAAGDFMVAARIPRFLRNKHIFVGPRVYSYILEAAERKNDIDMLTHVFKDLLVSCESVGSDSYLVVARGFGKQNSRGMLLNFIREVCEMDLPRIDIVLNRIIYALGKCGNPDGALLVFEDMKSSGCRPDLITYNTVLAILGRLGRVDDMLRVFASMRAVGLAPDIFTYNTILNSLRKMGRLDLCMVHFREMTE...
XP_057792528.1
MAGFLVKSFRVSALSVLSNSVGSRLSLSTQIPSEETTDEILNQILAAEEDSPSSSREELCVGYIRKLCAAGDFMVAARIPRFLRNKHIFVGPRVYSYILEAAERKNDIDMLTHVFKDLLVSCESVGSDSYLVVARGFGKQNSRGMLLNFIREVCEMDLPRIDIVLNRIIYALGKCGNPDGALLVFEDMKSSGCRPDLITYNTVLAILGRLGRVDDMLRVFASMRAVGLAPDIFTYNTILNSLRKMGRLDLCMVHFREMTE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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