当前解析结果
SmilChr02G005320| 统一新 Gene ID | SmilChr02G005320 |
|---|---|
| 名称 | SmilChr02G005320 |
| 描述 | transcription factor MYB8-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74074171 - 74075846 / - |
| NCBI Gene ID | LOC131009289 |
|---|---|
| GeneID | 131009289 |
| locus_tag | - |
| NCBI Name | LOC131009289 |
| 原始查询 | LOC131009289 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB8-like |
| 产物 | transcription factor MYB8-like |
| Arabidopsis | AT5G10280 (MYB92)myb domain protein 92 [Source:NCBI gene (formerly Entrezgene);Acc:830892] identity=62.6; qcov=0.447; evalue=5.84e-52; confidence=low |
| Rice | Os06g0221000- identity=62.7; qcov=0.459; evalue=2.73e-54; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009289 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057792567.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057792567.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057792567.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057792567.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057792567.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74074367 |
A |
AC |
1bp_insertion | frameshift_variant | 2 | C2,C56 |
Chr2:74074367 |
A |
AC |
1bp_insertion | CDS_variant | 2 | C2,C56 |
Chr2:74074379 |
CG |
C |
1bp_deletion | frameshift_variant | 2 | C2,C56 |
Chr2:74074379 |
CG |
C |
1bp_deletion | CDS_variant | 2 | C2,C56 |
Chr2:74074437 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:74074441 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B54,B82,C43 |
Chr2:74074532 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B117,B124,B53,B9,C41 |
Chr2:74074541 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B42,B43,B54,B82,C43 |
Chr2:74074561 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | B86 |
Chr2:74074561 |
GC |
G |
1bp_deletion | CDS_variant | 1 | B86 |
Chr2:74074564 |
GC |
G |
1bp_deletion | frameshift_variant | 8 | B102,B117,B124,B53,B78,B9,C41,C44 |
Chr2:74074567 |
GCC |
G |
2bp_deletion | frameshift_variant | 8 | B102,B117,B124,B53,B78,B9,C41,C44 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792567.1PF00249
Myb_DNA-binding 14-61 aa
PF13921
Myb_DNA-bind_6 17-75 aa
PF00249
Myb_DNA-binding 67-110 aa
PF13921
Myb_DNA-bind_6 70-120 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792567.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 14 | 61 | 1.8e-31 | 108.7 | Myb-like DNA-binding domain |
XP_057792567.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 17 | 75 | 8.3e-22 | 77.9 | Myb-like DNA-binding domain |
XP_057792567.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 67 | 110 | 1.8e-31 | 108.7 | Myb-like DNA-binding domain |
XP_057792567.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 70 | 120 | 8.3e-22 | 77.9 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。