Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005277`

染色体: Chr02 坐标: 73834413-73836208 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005277`
名称	SmilChr02G005277
描述	uncharacterized SmilChr02G005277
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	73834413 - 73836208 / `-`

ID 对照

NCBI Gene ID	`LOC131009290`
GeneID	`131009290`
locus_tag	`-`
NCBI Name	`LOC131009290`
原始查询	`LOC131009290`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820545]; symbol=AT3G13440; hit=AT3G13440; species=arabidopsis; confidence=high
产物	S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820545]; symbol=AT3G13440; hit=AT3G13440; species=arabidopsis; confidence=high
Arabidopsis	`AT3G13440` (AT3G13440) S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:820545] identity=72.7; qcov=0.847; evalue=6.95e-114; confidence=high
Rice	`Os03g0824200` (OSJNBb0081B07.5) - identity=60.7; qcov=0.937; evalue=3.58e-92; confidence=high
GO	GO:0003676 (nucleic acid binding); GO:0008276 (protein methyltransferase activity); GO:0008757 (S-adenosylmethionine-dependent methyltransferase activity); GO:0032259 (methylation); GO:0035657 (eRF1 methyltransferase complex)
KEGG	-
Pfam	PF05175 (MTS)
InterPro	-
eggNOG	-
NR	GeneID:131009290

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057792568.1`
2	Cytosol	细胞质基质	0.80000	`XP_057792568.1`
3	Nucleus	细胞核	0.40000	`XP_057792568.1`
4	Chromosome	染色体	0.00000	`XP_057792568.1`
5	Centromere	着丝粒	0.00000	`XP_057792568.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:73835031`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B108,B122,C49,C78
`Chr2:73835073`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:73835174`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B23,B59,C31
`Chr2:73835371`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C30,C35
`Chr2:73835430`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B136,B16,B34,B41,B69
`Chr2:73835460`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A11
`Chr2:73835616`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792568.1

255 aa

128

255

MTS

PF05175 MTS 47-172 aa

XP_057792569.1

255 aa

128

255

MTS

PF05175 MTS 47-172 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792568.1`	Pfam	`PF05175`	MTS	Domain	47	172	2.4e-10	41.0	Methyltransferase small domain
`XP_057792569.1`	Pfam	`PF05175`	MTS	Domain	47	172	2.4e-10	41.0	Methyltransferase small domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936585.1
ATTTGCAATCCGAATTAGCAAACAATTCCCAAATCACAAATTACAAGCCCTAGCCCCCAAATCCCACAATCCAACAATCCACCGCAGTGGCGGCACAATTCGTTGTCCTCGCCGGAGAAACGGCAGCCCATCGGCGCATCTCGTCGTCATCGGGTATTTTCCCTCGCATTCTGCATCATGCACTCCAACATTGCTCGAATTAAGCTCGTGAGCTCCCACCCTGAAGTTTATGATCCGTGTGATGATTCATTTGCATTGGT...

XM_057936586.1
TAGCAAACAATTCCCAAATCACAAATTACAAGCCCTAGCCCCCAAATCCCACAATCCAACAATCCACCGCAGTGGCGGCACAATTCGTTGTCCTCGCCGGAGAAACGGCAGCCCATCGGCGCATCTCGTCGTCATCGGTAGGTATTTTCCCTCGCATTCTGCATCATGCACTCCAACATTGCTCGAATTAAGCTCGTGAGCTCCCACCCTGAAGTTTATGATCCGTGTGATGATTCATTTGCATTGGTTGATGCATTGCT...

CDS

2 records

下载 CDS FASTA

LOC131009290
ATGCACTCCAACATTGCTCGAATTAAGCTCGTGAGCTCCCACCCTGAAGTTTATGATCCGTGTGATGATTCATTTGCATTGGTTGATGCATTGCTAGCCGATAGAGCTAATCTAATAGACCATGGCCCTTCGATTTGCATGGAAATCGGCTGCGGCAGTGGCTATGTCATTACTTCGCTTGCTCTGTTGCTTGGGAAAGAGTGCTCTGGTTCATACTACATTGCAACAGACATAAATCCCCACGCCATCACAGCCACGCA...

Protein

2 records

下载 Protein FASTA

XP_057792568.1
MHSNIARIKLVSSHPEVYDPCDDSFALVDALLADRANLIDHGPSICMEIGCGSGYVITSLALLLGKECSGSYYIATDINPHAITATHETLEAHGCRAEVVNTDIASGLEKRLAGCVDVMVVNPPYVPTPDAEVGCRGIASAWAGGENGRRVIDRILPAADNLLSDKGWLYMVTLTANNPVELCLQMRKKGYASRIILQRSTEEESLSIIKFWRDTDTLLEANECTPVEKTENGIRVELPHFSPFSFWNYGNRTTN

XP_057792569.1
MHSNIARIKLVSSHPEVYDPCDDSFALVDALLADRANLIDHGPSICMEIGCGSGYVITSLALLLGKECSGSYYIATDINPHAITATHETLEAHGCRAEVVNTDIASGLEKRLAGCVDVMVVNPPYVPTPDAEVGCRGIASAWAGGENGRRVIDRILPAADNLLSDKGWLYMVTLTANNPVELCLQMRKKGYASRIILQRSTEEESLSIIKFWRDTDTLLEANECTPVEKTENGIRVELPHFSPFSFWNYGNRTTN

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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