Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005261

染色体: Chr02 坐标: 73698250-73699763 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005261
名称SmilChr02G005261
描述transcription factor bHLH162-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向73698250 - 73699763 / -

ID 对照

NCBI Gene IDLOC131009294
GeneID131009294
locus_tag-
NCBI NameLOC131009294
原始查询LOC131009294

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述transcription factor bHLH162-like
产物transcription factor bHLH162-like
ArabidopsisAT4G20970 (AT4G20970)
basic helix-loop-helix (bHLH) DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:827844]
identity=31.7; qcov=0.667; evalue=1.21e-16; confidence=low
RiceOs01g0108600 (P0482C06.23-1)
-
identity=25; qcov=0.797; evalue=2.22e-10; confidence=low
GOGO:0000977 (RNA polymerase II transcription regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0006357 (regulation of transcription by RNA polymerase II); GO:0046983 (protein dimerization activity); GO:0090575 (RNA polymerase II transcription regulator complex)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131009294

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057792573.1
2 Chromosome 染色体 0.00000 XP_057792573.1
3 Centromere 着丝粒 0.00000 XP_057792573.1
4 Chromatin 染色质 0.00000 XP_057792573.1
5 Telomere 端粒 0.00000 XP_057792573.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:73698500 C T EMS_canonical_SNV CDS_variant 3 B102,B118,B26
Chr2:73698826 G A EMS_canonical_SNV CDS_variant 2 B65,C13
Chr2:73698861 C T EMS_canonical_SNV CDS_variant 2 A7,B40
Chr2:73698911 C T EMS_canonical_SNV CDS_variant 1 B64
Chr2:73698958 C T EMS_canonical_SNV CDS_variant 2 B46,B75
Chr2:73699006 C T EMS_canonical_SNV CDS_variant 2 C53,C57
Chr2:73699546 G A EMS_canonical_SNV CDS_variant 1 B50
Chr2:73699649 A ATT 2bp_insertion frameshift_variant 58 A11,A13,A18,A24,A25,A4,A5,A9,B1,B111,B12,B121,B126,B128,B13,B132,B136,B138,B16,B17,B20,B33,B34,B36,B37,B39,B45,B49,B60,B68,B71,B78,B8,B81,B85,B89,B90,C1,C11,C14,C18,C3,C40,C43,C47,C5,C59,C62,C67,C69,C73,C74,C78,C8,D1,D10,D3,D5

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936590.1
ACCAAAACCTCCTCTCTCTCTCTCCCTCTACTGCATAAGTTAACTGAACCAGAATTTTTTTTCCCAATATACAAATTATTTAGAAAAAACCCTCACTAAAAATAAGCAAAAAAATGGGGAAGCCTTGTCGAATTCCATCAAATGCAAGCAAAAATCCAAGAATTGAGAGGAAAATCATTGAGAAAAATAGAAGAAATAAAATGAAGAATCTCTATTCCCAGCTCGTTTCTCACCTTCCACCTCAGCCCTCCTCGCTAGTG...

CDS

1 records

下载 CDS FASTA
LOC131009294
ATGGGGAAGCCTTGTCGAATTCCATCAAATGCAAGCAAAAATCCAAGAATTGAGAGGAAAATCATTGAGAAAAATAGAAGAAATAAAATGAAGAATCTCTATTCCCAGCTCGTTTCTCACCTTCCACCTCAGCCCTCCTCGCTAGTGGAAGGGGCGCCATTGCCGGATCAAATAGACCAAGTTGTGGAGCATATAAAAAACATGAAGACGAAGCTGGAGAAGTTGAGGCAAAAAAAGGATTTTTTATTGCAGAGAAATAA...

Protein

1 records

下载 Protein FASTA
XP_057792573.1
MGKPCRIPSNASKNPRIERKIIEKNRRNKMKNLYSQLVSHLPPQPSSLVEGAPLPDQIDQVVEHIKNMKTKLEKLRQKKDFLLQRNKQPINNNSCITNTQNEGKNLISSPLVEVQDMGPNLDVVLAKNLQNFSSFRDIISLVHQHGVEIASASFSRDGNSSIQVLHDKVGHPKPGFDGATIARKMKELVCKGMNPSSSEVVESEMNLWDYGIDSNWGFEIPEVLLPGLQEFMVTMEKFKCDNQISV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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