当前解析结果
SmilChr02G005364| 统一新 Gene ID | SmilChr02G005364 |
|---|---|
| 名称 | SmilChr02G005364 |
| 描述 | uncharacterized SmilChr02G005364 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74348519 - 74350578 / - |
| NCBI Gene ID | LOC131009316 |
|---|---|
| GeneID | 131009316 |
| locus_tag | - |
| NCBI Name | LOC131009316 |
| 原始查询 | LOC131009316 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Transmembrane protein 97, Putative [Source:NCBI gene (formerly Entrezgene);Acc:817799]; symbol=AT2G32380; hit=AT2G32380; species=arabidopsis; confidence=high |
| 产物 | Transmembrane protein 97, Putative [Source:NCBI gene (formerly Entrezgene);Acc:817799]; symbol=AT2G32380; hit=AT2G32380; species=arabidopsis; confidence=high |
| Arabidopsis | AT2G32380 (AT2G32380)Transmembrane protein 97, Putative [Source:NCBI gene (formerly Entrezgene);Acc:817799] identity=53.6; qcov=1.02; evalue=2.13e-62; confidence=high |
| Rice | Os07g0458700- identity=53.3; qcov=1.01; evalue=1.11e-52; confidence=high |
| GO | GO:0005783 (endoplasmic reticulum) |
| KEGG | - |
| Pfam | PF05241 (EBP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009316 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057792598.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057792598.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792598.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792598.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792598.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74348801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,B94,C53,C61 |
Chr2:74348802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B65 |
Chr2:74348819 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B1,B54 |
Chr2:74348862 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B12,C1,C2,C54,D8 |
Chr2:74348917 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | A2,B94,C53,C61 |
Chr2:74350320 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr2:74350362 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C44 |
Chr2:74350426 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C2,C32,C68,C72 |
Chr2:74350433 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B107,B115,B50 |
Chr2:74350462 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:74350483 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B59,C15 |
Chr2:74350520 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B106,B27,B46,B70,C62 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792598.1PF05241
EBP 42-138 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792598.1 |
Pfam | PF05241 |
EBP | Family | 42 | 138 | 8.6e-14 | 52.6 | EXPERA (EXPanded EBP superfamily) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。