当前解析结果
SmilChr01G003090| 统一新 Gene ID | SmilChr01G003090 |
|---|---|
| 名称 | SmilChr01G003090 |
| 描述 | late blight resistance protein R1-A-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49717894 - 49720263 / - |
| NCBI Gene ID | LOC131009347 |
|---|---|
| GeneID | 131009347 |
| locus_tag | - |
| NCBI Name | LOC131009347 |
| 原始查询 | LOC131009347 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | late blight resistance protein R1-A-like |
| 产物 | late blight resistance protein R1-A-like |
| Arabidopsis | AT3G46530 (RPP13)NB-ARC domain-containing disease resistance protein [Source:NCBI gene (formerly Entrezgene);Acc:823806] identity=28.6; qcov=0.878; evalue=8.52e-61; confidence=low |
| Rice | Os07g0186500- identity=30.2; qcov=0.899; evalue=1.25e-70; confidence=low |
| GO | GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009347 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 0.80000 | XP_057792630.1 |
| 2 | Cytosol | 细胞质基质 | 0.20000 | XP_057792630.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792630.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792630.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792630.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49717952 |
T |
TCG |
2bp_insertion | frameshift_variant | 11 | A3,B1,B10,B115,B133,B44,B50,B62,B77,B84,C62 |
Chr1:49717954 |
G |
GTC |
2bp_insertion | stop_gained,frameshift_variant | 11 | A3,B1,B10,B115,B133,B44,B50,B62,B77,B84,C62 |
Chr1:49718084 |
C |
CAT |
2bp_insertion | frameshift_variant | 130 | A1,A11,A13,A14,A15,A19,A20,A21,A22,A23,A24,A6,A7,B102,B103,B104,B108,B111,B112,B113,B114,B118,B119,B12,B121,B122,B123,B124,B126,B130,B133,B134,B138,B14,B140,B15,B16,B17,B18,B2,B21,B22,B26,B28,B3,B30,B33,B35,B36,B37,B38,B39,B4,B41,B47,B49,B5,B53,B54,B55,B58,B59,B60,B61,B63,B64,B65,B67,B68,B69,B73,B74,B75,B78,B79,B83,B84,B87,B88,B89,B9,B90,B92,B95,B97,C10,C12,C14,C17,C19,C20,C22,C27,C3,C31,C32,C35,C36,C40,C42,C44,C46,C5,C50,C54,C59,C60,C64,C65,C68,C72,C73,C74,C75,C77,C79,C8,C80,C82,C83,C85,C87,C9,D1,D11,D4,D6,D7,D8,D9 |
Chr1:49718090 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr1:49718103 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B102,B43,B71 |
Chr1:49718173 |
AG |
A |
1bp_deletion | frameshift_variant | 4 | A5,C2,C61,C78 |
Chr1:49718173 |
AG |
A |
1bp_deletion | CDS_variant | 4 | A5,C2,C61,C78 |
Chr1:49718182 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B2,B23,B8,C57,C65 |
Chr1:49718218 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B8,C57 |
Chr1:49718247 |
C |
CT |
1bp_insertion | frameshift_variant | 4 | A5,C2,C61,C78 |
Chr1:49718247 |
C |
CT |
1bp_insertion | CDS_variant | 4 | A5,C2,C61,C78 |
Chr1:49718335 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792630.1PF00931
NB-ARC 65-233 aa
PF23559
WHD_DRP 316-386 aa
PF23598
LRR_14 439-728 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792630.1 |
Pfam | PF00931 |
NB-ARC | Domain | 65 | 233 | 1.8e-40 | 139.1 | NB-ARC domain |
XP_057792630.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 316 | 386 | 1.2e-17 | 64.4 | Disease resistance protein Winged helix domain |
XP_057792630.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 439 | 728 | 3.5e-17 | 62.9 | Leucine-rich repeat region |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。