Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005370`

染色体: Chr02 坐标: 74374767-74398206 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005370`
名称	SmilChr02G005370
描述	bicyclo-germacrene synthase-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74374767 - 74398206 / `-`

ID 对照

NCBI Gene ID	`LOC131009351`
GeneID	`131009351`
locus_tag	`-`
NCBI Name	`LOC131009351`
原始查询	`LOC131009351`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bicyclo-germacrene synthase-like
产物	bicyclo-germacrene synthase-like
Arabidopsis	`AT5G23960` (TPS21) terpene synthase 21 [Source:NCBI gene (formerly Entrezgene);Acc:832461] identity=34.4; qcov=0.982; evalue=1.95e-86; confidence=low
Rice	`Os08g0139700` (OsTPS29) - identity=37.1; qcov=0.987; evalue=4.87e-93; confidence=medium
GO	GO:0000287 (magnesium ion binding); GO:0010333 (terpene synthase activity); GO:0016102 (diterpenoid biosynthetic process)
KEGG	smil00909 (Sesquiterpenoid and triterpenoid biosynthesis - Salvia miltiorrhiza (redroot sage))
Pfam	PF01397 (Terpene_synth); PF03936 (Terpene_synth_C); PF19086 (Terpene_syn_C_2)
InterPro	-
eggNOG	-
NR	GeneID:131009351

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	0.80000	`XP_057792629.1`
2	Cytoplasm	细胞质	0.60000	`XP_057792629.1`
3	Chloroplast	叶绿体	0.40000	`XP_057792629.1`
4	Nucleus	细胞核	0.00000	`XP_057792629.1`
5	Chromosome	染色体	0.00000	`XP_057792629.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74376126`	`T`	`TGC`	2bp_insertion	frameshift_variant	3	B1,B83,D10
`Chr2:74376126`	`T`	`TGC`	2bp_insertion	CDS_variant	3	B1,B83,D10
`Chr2:74376131`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B1,B83,D10
`Chr2:74376147`	`A`	`AT`	1bp_insertion	frameshift_variant	12	B119,B135,B32,B4,B57,B64,B69,C27,C30,C41,C61,C77
`Chr2:74376172`	`G`	`A`	EMS_canonical_SNV	stop_gained	20	A15,B102,B127,B138,B23,B24,B28,B31,B32,B41,B50,B63,B88,B97,C5,C55,C80,C85,C9,D4
`Chr2:74376192`	`TC`	`T`	1bp_deletion	frameshift_variant	1	D10
`Chr2:74376192`	`TC`	`T`	1bp_deletion	CDS_variant	1	D10
`Chr2:74376206`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr2:74376258`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B7
`Chr2:74376260`	`A`	`AT`	1bp_insertion	frameshift_variant	1	D10
`Chr2:74376260`	`A`	`AT`	1bp_insertion	CDS_variant	1	D10
`Chr2:74376287`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C72

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792629.1

545 aa

272

545

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 21-195 aa PF03936 Terpene_synth_C 252-489 aa PF19086 Terpene_syn_C_2 292-489 aa

XP_057792631.1

453 aa

226

453

Terpene_synth

Terpene_synth_C

Terpene_syn_C_2

PF01397 Terpene_synth 21-195 aa PF03936 Terpene_synth_C 252-451 aa PF19086 Terpene_syn_C_2 292-450 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792629.1`	Pfam	`PF01397`	Terpene_synth	Repeat	21	195	1.4e-54	185.4	Terpene synthase, N-terminal domain
`XP_057792629.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	252	489	9.1e-76	255.1	Terpene synthase family, metal binding domain
`XP_057792629.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	292	489	1.6e-41	143.0	Terpene synthase family 2, C-terminal metal binding
`XP_057792631.1`	Pfam	`PF01397`	Terpene_synth	Repeat	21	195	2.2e-54	184.8	Terpene synthase, N-terminal domain
`XP_057792631.1`	Pfam	`PF03936`	Terpene_synth_C	Domain	252	451	7.8e-65	219.3	Terpene synthase family, metal binding domain
`XP_057792631.1`	Pfam	`PF19086`	Terpene_syn_C_2	Domain	292	450	9.1e-32	111.2	Terpene synthase family 2, C-terminal metal binding

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936648.1
CAAATGAAACAGCAACCATCTTTCAATACATTTCACACACACACACACACACAAGAATATATACTGCAAGATGGATGAGTATGTCAAGAGTTTAGATGAACGTCGTAAATCGGCTAAATATCATCCATCCATTTGGGGAGACTATTTTCTTGCATATAATTCAGATAATACGAAAATCTCAGATGCTGAGCAAGAAGAACTCGCAAAGCAGAAAGAAAAGGTCAGAAATTTGTTAGCTCAAACTCCAAATGATTCAACGT...

XM_057936646.1
CAAATGAAACAGCAACCATCTTTCAATACATTTCACACACACACACACACACAAGAATATATACTGCAAGATGGATGAGTATGTCAAGAGTTTAGATGAACGTCGTAAATCGGCTAAATATCATCCATCCATTTGGGGAGACTATTTTCTTGCATATAATTCAGATAATACGAAAATCTCAGATGCTGAGCAAGAAGAACTCGCAAAGCAGAAAGAAAAGGTCAGAAATTTGTTAGCTCAAACTCCAAATGATTCAACGT...

CDS

2 records

下载 CDS FASTA

LOC131009351
ATGGATGAGTATGTCAAGAGTTTAGATGAACGTCGTAAATCGGCTAAATATCATCCATCCATTTGGGGAGACTATTTTCTTGCATATAATTCAGATAATACGAAAATCTCAGATGCTGAGCAAGAAGAACTCGCAAAGCAGAAAGAAAAGGTCAGAAATTTGTTAGCTCAAACTCCAAATGATTCAACGTATAAAATGGAACTCATCGATGCGATCCAGCGCCTCGGTGTGGAATATCATTTTCAAAAAGAAATTGAGGA...

Protein

2 records

下载 Protein FASTA

XP_057792629.1
MDEYVKSLDERRKSAKYHPSIWGDYFLAYNSDNTKISDAEQEELAKQKEKVRNLLAQTPNDSTYKMELIDAIQRLGVEYHFQKEIEESLQNIHENSKDKDDLNLSSVALRFRLLRQQGYNVSSDVFCKYTDSEGNYAASLQNNVGDLLNLYEAAHLGTHGEEILDRAIEFCSSHLHASRHKITSASLSKLVKEALKTPNRRSLTRLGARRFIAAYEEDESRNETLLNFAKLDFNIVQKMHQRELSDATRWWKKLDVENKM...

XP_057792631.1
MDEYVKSLDERRKSAKYHPSIWGDYFLAYNSDNTKISDAEQEELAKQKEKVRNLLAQTPNDSTYKMELIDAIQRLGVEYHFQKEIEESLQNIHENSKDKDDLNLSSVALRFRLLRQQGYNVSSDVFCKYTDSEGNYAASLQNNVGDLLNLYEAAHLGTHGEEILDRAIEFCSSHLHASRHKITSASLSKLVKEALKTPNRRSLTRLGARRFIAAYEEDESRNETLLNFAKLDFNIVQKMHQRELSDATRWWKKLDVENKM...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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