Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005391`

染色体: Chr02 坐标: 74529821-74531940 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005391`
名称	SmilChr02G005391
描述	uncharacterized SmilChr02G005391
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74529821 - 74531940 / `+`

ID 对照

NCBI Gene ID	`LOC131009368`
GeneID	`131009368`
locus_tag	`-`
NCBI Name	`LOC131009368`
原始查询	`LOC131009368`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	AT5G01150; symbol=AT5G01150; hit=AT5G01150; species=arabidopsis; confidence=low
产物	AT5G01150; symbol=AT5G01150; hit=AT5G01150; species=arabidopsis; confidence=low
Arabidopsis	`AT5G01150` (AT5G01150) - identity=28.4; qcov=1.07; evalue=2.37e-48; confidence=low
Rice	`Os04g0594500` - identity=29.6; qcov=0.803; evalue=3.5e-37; confidence=low
GO	-
KEGG	-
Pfam	PF05056 (DUF674)
InterPro	-
eggNOG	-
NR	GeneID:131009368

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792646.1`
2	Chromosome	染色体	0.00000	`XP_057792646.1`
3	Centromere	着丝粒	0.00000	`XP_057792646.1`
4	Chromatin	染色质	0.00000	`XP_057792646.1`
5	Telomere	端粒	0.00000	`XP_057792646.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74530427`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C29,C55
`Chr2:74530457`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B20,B6,C73
`Chr2:74530478`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:74530480`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B73,C48,D2
`Chr2:74530489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B58,C40,C82
`Chr2:74530511`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B111,B140,B18,C54
`Chr2:74530525`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr2:74530646`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B30,B67
`Chr2:74530727`	`TTA`	`T`	2bp_deletion	frameshift_variant	13	B131,B136,B137,B30,B54,B55,B58,B67,B8,B82,C38,C50,C82
`Chr2:74530731`	`T`	`TCG`	2bp_insertion	frameshift_variant	13	B131,B136,B137,B30,B54,B55,B58,B67,B8,B82,C38,C50,C82
`Chr2:74530774`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B131,B54,D11,D9
`Chr2:74530808`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B35,B53,C47,C7,C85

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792646.1

458 aa

229

458

DUF674

PF05056 DUF674 6-340 aa PF05056 DUF674 368-451 aa

XP_057792647.1

458 aa

229

458

DUF674

PF05056 DUF674 6-340 aa PF05056 DUF674 368-451 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792646.1`	Pfam	`PF05056`	DUF674	Family	6	340	9.9e-86	289.0	Protein of unknown function (DUF674)
`XP_057792646.1`	Pfam	`PF05056`	DUF674	Family	368	451	9.9e-86	289.0	Protein of unknown function (DUF674)
`XP_057792647.1`	Pfam	`PF05056`	DUF674	Family	6	340	9.9e-86	289.0	Protein of unknown function (DUF674)
`XP_057792647.1`	Pfam	`PF05056`	DUF674	Family	368	451	9.9e-86	289.0	Protein of unknown function (DUF674)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936663.1
CAAGCTTGAAGCTGCGACCATAATTTACTGTTCCAAGTTTTCAGAGCAAAGCTTGAAGCTACTTTTTTTCTATATTCCACTCGCCACCGCTTCTCGCCTTCCCGACTGCCACCGGAGCTCCGCCGCGCTCAGCCACCGTCTGCTGCGTTTTTTTCCGTATCTCAGGCTCCACGCCATCCTATTTTCATCAAAAACCTCTGTTGTCGAGCTTCACTCGCCGGTAACCCTAATCCCCTTTCCTCTGTGATTAGAATCGCCGA...

XM_057936664.1
CAAGCTTGAAGCTGCGACCATAATTTACTGTTCCAAGTTTTCAGAGCAAAGCTTGAAGCTACTTTTTTTCTATATTCCACTCGCCACCGCTTCTCGCCTTCCCGACTGCCACCGGAGCTCCGCCGCGCTCAGCCACCGTCTGCTGCGTTTTTTTCCGTATCTCAGGCTCCACGCCATCCTATTTTCATCAAAAACCTCTGTTGTCGAGCTTCACTCGCCGAATCGCCGAAAATGTCTGATGCTGAAGAAGTAAAGGTCTC...

CDS

2 records

下载 CDS FASTA

LOC131009368
ATGTCTGATGCTGAAGAAGTAAAGGTCTCACTGAAAGTGATGATGAACAAACAGAAATCCAAGGTGCTATTTGCAGAATCCGACAGCGATTTTGTAGACATTTTGTTGAGCTTCTTGACTTTGCCGTTGGGAAGAACTGTGAAAGTTCTGGAGAAACACTACGGAGATGAGGCACCCACCATTGGAAGCTTAAACAATTTGTACCGCAGCTTAGCAAATCTTGACAGCTCCCATTTTGTGACGGAGGGTGCTAAGCAGAC...

Protein

2 records

下载 Protein FASTA

XP_057792646.1
MSDAEEVKVSLKVMMNKQKSKVLFAESDSDFVDILLSFLTLPLGRTVKVLEKHYGDEAPTIGSLNNLYRSLANLDSSHFVTEGAKQTLLDSASSFEDKYKMLKVDISDSPPAEYFVCSSCANRRLRCDSIYYDSISCYYCEDTMSKEVVEKSCEADGPSDGVFTKHTSSFLISNDLHILPKNARFLTTVGILGITVTDMDNAVSIKVDFGISEIMKLLKASLMSPTPLSDLILNKSTTLMNNSTPVVESRSNHSSRYFSL...

XP_057792647.1
MSDAEEVKVSLKVMMNKQKSKVLFAESDSDFVDILLSFLTLPLGRTVKVLEKHYGDEAPTIGSLNNLYRSLANLDSSHFVTEGAKQTLLDSASSFEDKYKMLKVDISDSPPAEYFVCSSCANRRLRCDSIYYDSISCYYCEDTMSKEVVEKSCEADGPSDGVFTKHTSSFLISNDLHILPKNARFLTTVGILGITVTDMDNAVSIKVDFGISEIMKLLKASLMSPTPLSDLILNKSTTLMNNSTPVVESRSNHSSRYFSL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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