当前解析结果
SmilChr01G003094| 统一新 Gene ID | SmilChr01G003094 |
|---|---|
| 名称 | SmilChr01G003094 |
| 描述 | glutamate receptor 2.7-like |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49750153 - 49758445 / - |
| NCBI Gene ID | LOC131009369 |
|---|---|
| GeneID | 131009369 |
| locus_tag | - |
| NCBI Name | LOC131009369 |
| 原始查询 | LOC131009369 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | glutamate receptor 2.7-like |
| 产物 | glutamate receptor 2.7-like |
| Arabidopsis | AT2G29120 (GLR2.7)glutamate receptor 2.7 [Source:NCBI gene (formerly Entrezgene);Acc:817460] identity=44; qcov=0.992; evalue=0; confidence=medium |
| Rice | Os09g0429500 (OsGLR2.4)- identity=45; qcov=0.935; evalue=0; confidence=medium |
| GO | GO:0004970 (glutamate-gated receptor activity); GO:0005886 (plasma membrane) |
| KEGG | - |
| Pfam | PF00060 (Lig_chan); PF00497 (SBP_bac_3); PF01094 (ANF_receptor); PF10613 (Lig_chan-Glu_bd); PF13458 (Peripla_BP_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009369 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057792652.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057792652.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057792652.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057792652.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057792652.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49750323 |
GAA |
G |
2bp_deletion | frameshift_variant | 174 | A10,A13,A14,A16,A18,A19,A2,A20,A21,A23,A24,A25,A5,A7,A9,B1,B100,B101,B102,B104,B106,B107,B11,B110,B111,B112,B113,B114,B115,B117,B118,B119,B12,B120,B121,B122,B124,B125,B126,B127,B129,B131,B133,B135,B139,B14,B140,B15,B16,B19,B2,B20,B21,B23,B25,B28,B29,B3,B30,B33,B34,B35,B36,B37,B40,B41,B42,B43,B44,B45,B46,B48,B5,B50,B52,B53,B54,B55,B56,B57,B58,B6,B60,B62,B65,B66,B67,B69,B7,B70,B71,B72,B74,B76,B77,B78,B79,B8,B80,B85,B86,B9,B90,B91,B92,B93,B94,B96,B98,B99,C1,C11,C15,C17,C19,C2,C21,C22,C24,C26,C29,C3,C30,C31,C32,C33,C36,C39,C4,C40,C41,C42,C44,C45,C46,C47,C49,C51,C52,C53,C54,C55,C57,C58,C6,C60,C61,C62,C63,C64,C65,C66,C67,C68,C69,C7,C72,C73,C76,C77,C78,C79,C8,C80,C81,C84,C86,C87,D10,D11,D2,D3,D5,D7 |
Chr1:49750373 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B36 |
Chr1:49750429 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B109,C6 |
Chr1:49750532 |
GA |
G |
1bp_deletion | frameshift_variant | 58 | A15,A22,A5,B103,B105,B108,B109,B110,B115,B128,B132,B135,B136,B137,B138,B14,B19,B2,B20,B22,B25,B26,B27,B30,B32,B33,B39,B4,B47,B49,B55,B74,B76,B83,B95,C10,C13,C14,C25,C27,C31,C34,C5,C50,C53,C54,C55,C59,C65,C70,C74,C75,C83,C85,D1,D10,D8,D9 |
Chr1:49750535 |
CA |
C |
1bp_deletion | frameshift_variant | 62 | A15,A19,A22,A5,B103,B105,B108,B109,B110,B115,B121,B128,B132,B135,B136,B137,B138,B14,B19,B2,B20,B22,B25,B26,B27,B30,B32,B33,B39,B4,B47,B49,B51,B55,B74,B76,B83,B95,B97,C10,C13,C14,C25,C27,C28,C31,C34,C5,C53,C54,C55,C59,C65,C70,C74,C75,C83,C85,D1,D10,D8,D9 |
Chr1:49750629 |
GA |
G |
1bp_deletion | frameshift_variant | 120 | A1,A13,A15,A22,A25,A3,A4,A5,A7,A8,A9,B10,B103,B104,B105,B108,B109,B110,B114,B115,B117,B121,B123,B124,B127,B128,B13,B130,B132,B134,B135,B136,B137,B138,B14,B140,B17,B18,B19,B2,B20,B22,B24,B25,B26,B27,B30,B31,B32,B33,B38,B39,B4,B42,B43,B44,B47,B49,B51,B54,B55,B59,B63,B64,B66,B73,B74,B75,B77,B78,B79,B8,B81,B82,B83,B85,B87,B88,B89,B91,B95,B97,B98,C10,C13,C14,C16,C17,C27,C28,C31,C34,C37,C38,C39,C44,C48,C49,C5,C50,C53,C54,C55,C56,C57,C58,C59,C62,C65,C70,C74,C75,C82,C83,C85,C9,D1,D6,D8,D9 |
Chr1:49750631 |
GAT |
G |
2bp_deletion | frameshift_variant | 102 | A1,A13,A15,A22,A25,A3,A5,A8,A9,B103,B104,B105,B108,B109,B110,B114,B115,B117,B121,B123,B124,B127,B128,B13,B132,B135,B136,B137,B138,B14,B140,B17,B18,B19,B2,B20,B22,B24,B25,B26,B27,B30,B32,B33,B39,B4,B42,B47,B49,B51,B54,B55,B63,B64,B73,B74,B77,B78,B79,B8,B81,B83,B85,B87,B88,B89,B91,B95,B97,B98,C10,C13,C14,C16,C17,C27,C28,C31,C34,C37,C38,C39,C44,C48,C49,C5,C50,C53,C54,C55,C57,C58,C65,C70,C75,C83,C85,C9,D1,D6,D8,D9 |
Chr1:49750636 |
AG |
A |
1bp_deletion | frameshift_variant | 7 | A13,A4,B110,B136,B140,B54,B89 |
Chr1:49750657 |
GTT |
G |
2bp_deletion | frameshift_variant | 10 | A7,B123,B130,B25,B64,B77,B85,B98,C44,C85 |
Chr1:49750664 |
T |
TGC |
2bp_insertion | frameshift_variant | 3 | B104,B132,C31 |
Chr1:49750664 |
T |
TGC |
2bp_insertion | CDS_variant | 3 | B104,B132,C31 |
Chr1:49750677 |
GT |
G |
1bp_deletion | frameshift_variant | 100 | A1,A13,A15,A19,A22,A25,A3,A4,A5,A7,A8,A9,B103,B105,B108,B109,B110,B115,B117,B121,B123,B124,B127,B128,B13,B130,B132,B135,B136,B138,B14,B140,B17,B18,B19,B2,B22,B25,B26,B27,B30,B31,B33,B38,B39,B4,B42,B47,B49,B51,B54,B55,B59,B63,B64,B65,B69,B73,B74,B77,B78,B79,B8,B81,B83,B87,B88,B89,B91,B95,B97,B98,C10,C13,C14,C17,C27,C28,C31,C34,C37,C38,C48,C5,C50,C53,C54,C55,C62,C65,C70,C75,C82,C83,C85,C9,D1,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792652.1PF01094
ANF_receptor 1-345 aa
PF13458
Peripla_BP_6 21-280 aa
PF10613
Lig_chan-Glu_bd 422-506 aa
PF00497
SBP_bac_3 423-743 aa
PF00060
Lig_chan 524-773 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792652.1 |
Pfam | PF01094 |
ANF_receptor | Domain | 1 | 345 | 9.2e-71 | 239.4 | Receptor family ligand binding region |
XP_057792652.1 |
Pfam | PF13458 |
Peripla_BP_6 | Family | 21 | 280 | 9.6e-17 | 62.3 | Periplasmic binding protein |
XP_057792652.1 |
Pfam | PF10613 |
Lig_chan-Glu_bd | Domain | 422 | 506 | 1.2e-10 | 42.3 | Ligated ion channel L-glutamate- and glycine-binding site |
XP_057792652.1 |
Pfam | PF00497 |
SBP_bac_3 | Domain | 423 | 743 | 7.8e-17 | 62.0 | Bacterial extracellular solute-binding proteins, family 3 |
XP_057792652.1 |
Pfam | PF00060 |
Lig_chan | Family | 524 | 773 | 1.3e-34 | 119.9 | Ligand-gated ion channel |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。