当前解析结果
SmilChr01G003095| 统一新 Gene ID | SmilChr01G003095 |
|---|---|
| 名称 | SmilChr01G003095 |
| 描述 | uncharacterized SmilChr01G003095 |
| 染色体 / SeqID | Chr01 / NC_080387.1 |
| 坐标与链方向 | 49776377 - 49778196 / - |
| NCBI Gene ID | LOC131009390 |
|---|---|
| GeneID | 131009390 |
| locus_tag | - |
| NCBI Name | LOC131009390 |
| 原始查询 | LOC131009390 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835448]; symbol=AT5G53670; hit=AT5G53670; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835448]; symbol=AT5G53670; hit=AT5G53670; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G53670 (AT5G53670)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:835448] identity=39.3; qcov=0.94; evalue=2.52e-17; confidence=low |
| Rice | Os04g0629600- identity=25.6; qcov=1.13; evalue=4.81e-09; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009390 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057792680.1 |
| 2 | Cytoplasm | 细胞质 | 0.40000 | XP_057792680.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057792680.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792680.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792680.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr1:49776377 |
TCA |
T |
2bp_deletion | frameshift_variant | 1 | B27 |
Chr1:49776377 |
TCA |
T |
2bp_deletion | CDS_variant | 1 | B27 |
Chr1:49776503 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C13,C31 |
Chr1:49776515 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr1:49776522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,C13,C57 |
Chr1:49776540 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B54,B86,C13,C59 |
Chr1:49776797 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B12,C6,C85 |
Chr1:49776816 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A2,C13,C47,C49 |
Chr1:49776868 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A19 |
Chr1:49776876 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A11,A21,B120,B30,C55 |
Chr1:49776896 |
C |
CT |
1bp_insertion | frameshift_variant | 15 | B103,B125,B139,B21,B32,B34,B69,B87,B97,C18,C20,C23,C25,C39,C56 |
Chr1:49776903 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | B103,B2,B42,B50,C13,C16,C47,C49,C84 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。