Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005437`

染色体: Chr02 坐标: 74777892-74782898 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005437`
名称	SmilChr02G005437
描述	NEDD8-activating enzyme E1 regulatory subunit AXR1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74777892 - 74782898 / `-`

ID 对照

NCBI Gene ID	`LOC131009398`
GeneID	`131009398`
locus_tag	`-`
NCBI Name	`LOC131009398`
原始查询	`LOC131009398`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	NEDD8-activating enzyme E1 regulatory subunit AXR1-like
产物	NEDD8-activating enzyme E1 regulatory subunit AXR1-like
Arabidopsis	`AT1G05180` (AXR1) NAD(P)-binding Rossmann-fold superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:839286] identity=77.1; qcov=1; evalue=0; confidence=high
Rice	`Os03g0820100` (OJ1754_E06.18) - identity=69.9; qcov=0.996; evalue=0; confidence=high
GO	GO:0005737 (cytoplasm); GO:0019781 (NEDD8 activating enzyme activity); GO:0045116 (protein neddylation)
KEGG	-
Pfam	PF00899 (ThiF)
InterPro	-
eggNOG	-
NR	GeneID:131009398

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	1.00000	`XP_057792687.1`
2	Cytosol	细胞质基质	0.80000	`XP_057792687.1`
3	Nucleus	细胞核	0.20000	`XP_057792687.1`
4	Chromosome	染色体	0.00000	`XP_057792687.1`
5	Centromere	着丝粒	0.00000	`XP_057792687.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74778473`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B53,C3
`Chr2:74778482`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:74778523`	`TG`	`T`	1bp_deletion	frameshift_variant	10	B22,B42,B52,B6,B62,B75,C53,C60,C7,D7
`Chr2:74778656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B46,B70,C62,D10
`Chr2:74778744`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B10,B22,B35,D1
`Chr2:74778753`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B135,B53,C53
`Chr2:74778759`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B18,B97
`Chr2:74779083`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B71
`Chr2:74779095`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B5
`Chr2:74779364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B87,B89,C1,D8
`Chr2:74779391`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B18,B97
`Chr2:74779412`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792687.1

530 aa

265

530

ThiF

PF00899 ThiF 8-508 aa

XP_057792688.1

530 aa

265

530

ThiF

PF00899 ThiF 8-508 aa

XP_057792689.1

523 aa

262

523

ThiF

PF00899 ThiF 8-501 aa

XP_057792690.1

523 aa

262

523

ThiF

PF00899 ThiF 8-501 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792687.1`	Pfam	`PF00899`	ThiF	Domain	8	508	1.9e-27	96.7	ThiF family
`XP_057792688.1`	Pfam	`PF00899`	ThiF	Domain	8	508	1.9e-27	96.7	ThiF family
`XP_057792689.1`	Pfam	`PF00899`	ThiF	Domain	8	501	1.8e-27	96.7	ThiF family
`XP_057792690.1`	Pfam	`PF00899`	ThiF	Domain	8	501	1.8e-27	96.7	ThiF family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057936707.1
CTAAAGCATCAACCAAACAGCCCCTTAACAGTGACACTCTTCTCTTTTTCCCTCTCTTGGAATAGCTCTGCTAAATTTTCTCTGCGTATATTTATCCAAAAAAAAAAAAAAAATCTCTGCGTATCGACAAAGCTAATCAACAATGGCGGAACCCAAAACCAAATACGATCGCCAGCTCAGAATCTGGGGTGAGCAAGGGCAAGAAGCCCTCGAGAAATCAAGCATATGTTTGTTGAACTGCGGGCCCACCGGTTCAGAGA...

XM_057936706.1
CTAAAGCATCAACCAAACAGCCCCTTAACAGTGACACTCTTCTCTTTTTCCCTCTCTTGGAATAGCTCTGCTAAATTTTCTCTGCGTATATTTATCCAAAAAAAAAAAAAAAATCTCTGCGTATCGACAAAGCTAATCAACAATGGCGGAACCCAAAACCAAATACGATCGCCAGCTCAGAATCTGGGGTGAGCAAGGGCAAGAAGCCCTCGAGAAATCAAGCATATGTTTGTTGAACTGCGGGCCCACCGGTTCAGAGA...

CDS

4 records

下载 CDS FASTA

LOC131009398
ATGGCGGAACCCAAAACCAAATACGATCGCCAGCTCAGAATCTGGGGTGAGCAAGGGCAAGAAGCCCTCGAGAAATCAAGCATATGTTTGTTGAACTGCGGGCCCACCGGTTCAGAGACCTTGAAAAATCTAGTTCTTGGTGGAGTTGGAAGCATTACTGTTGTTGATGGCTCCAAAGTTGAGCTCGGGGACCTCGGGAATAACTTTATGGTGGACGAGTCGAGTGTTGGGCAATCGAAGGCGAAAACGGTCTGTGCCTT...

Protein

4 records

下载 Protein FASTA

XP_057792687.1
MAEPKTKYDRQLRIWGEQGQEALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVELGDLGNNFMVDESSVGQSKAKTVCAFLQELNDAVKAKFIEEYPEKLIESNPSFFSQFTLVVATQLVESSMVKLDRICREANVILIFARSYGLTGFVRISVKEHAVIESKPDHFLDDLRLNNPWPELRRYAESIDLDTADPVAHKHIPYVIILIKMADEWTKTHNGKLPSTREEKKVFKDLIKAKKIATDEDNYKEAMEA...

XP_057792688.1
MAEPKTKYDRQLRIWGEQGQEALEKSSICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVELGDLGNNFMVDESSVGQSKAKTVCAFLQELNDAVKAKFIEEYPEKLIESNPSFFSQFTLVVATQLVESSMVKLDRICREANVILIFARSYGLTGFVRISVKEHAVIESKPDHFLDDLRLNNPWPELRRYAESIDLDTADPVAHKHIPYVIILIKMADEWTKTHNGKLPSTREEKKVFKDLIKAKKIATDEDNYKEAMEA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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