Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005442`

染色体: Chr02 坐标: 74801781-74805413 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005442`
名称	SmilChr02G005442
描述	uncharacterized SmilChr02G005442
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74801781 - 74805413 / `+`

ID 对照

NCBI Gene ID	`LOC131009403`
GeneID	`131009403`
locus_tag	`-`
NCBI Name	`LOC131009403`
原始查询	`LOC131009403`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Peptidase M20/M25/M40 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829978]; symbol=AQI; hit=AT4G38220; species=arabidopsis; confidence=high
产物	Peptidase M20/M25/M40 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829978]; symbol=AQI; hit=AT4G38220; species=arabidopsis; confidence=high
Arabidopsis	`AT4G38220` (AQI) Peptidase M20/M25/M40 family protein [Source:NCBI gene (formerly Entrezgene);Acc:829978] identity=74.3; qcov=0.916; evalue=0; confidence=high
Rice	`Os06g0210200` - identity=57.8; qcov=0.901; evalue=2.42e-179; confidence=high
GO	GO:0004046 (aminoacylase activity); GO:0005737 (cytoplasm); GO:0006520 (amino acid metabolic process)
KEGG	smil00220 (Arginine biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01210 (2-Oxocarboxylic acid metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage))
Pfam	PF01546 (Peptidase_M20); PF07687 (M20_dimer)
InterPro	-
eggNOG	-
NR	GeneID:131009403

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	0.40000	`XP_057792695.1`
2	Endoplasmic reticulum lumen	内质网腔	0.40000	`XP_057792695.1`
3	Lysosome	溶酶体	0.20000	`XP_057792695.1`
4	Vacuole	液泡	0.20000	`XP_057792695.1`
5	Nucleus	细胞核	0.00000	`XP_057792695.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74802755`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B59
`Chr2:74802793`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:74802914`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D6
`Chr2:74802945`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:74802956`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C49
`Chr2:74802960`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C73,C80,D3
`Chr2:74803034`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:74803044`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B103,B89,C1,D8
`Chr2:74803238`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C41
`Chr2:74803278`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B103,B87,B89,C1,D8
`Chr2:74803296`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:74803300`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D6

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792695.1

458 aa

229

458

Peptidase_M20

M20_dimer

PF01546 Peptidase_M20 104-440 aa PF07687 M20_dimer 217-326 aa

XP_057792696.1

458 aa

229

458

Peptidase_M20

M20_dimer

PF01546 Peptidase_M20 104-440 aa PF07687 M20_dimer 217-326 aa

XP_057792697.1

455 aa

228

455

Peptidase_M20

M20_dimer

PF01546 Peptidase_M20 104-437 aa PF07687 M20_dimer 217-326 aa

XP_057792698.1

455 aa

228

455

Peptidase_M20

M20_dimer

PF01546 Peptidase_M20 104-437 aa PF07687 M20_dimer 217-326 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792695.1`	Pfam	`PF01546`	Peptidase_M20	Family	104	440	6.7e-34	118.3	Peptidase family M20/M25/M40
`XP_057792695.1`	Pfam	`PF07687`	M20_dimer	Domain	217	326	9.8e-05	23.0	Peptidase dimerisation domain
`XP_057792696.1`	Pfam	`PF01546`	Peptidase_M20	Family	104	440	6.7e-34	118.3	Peptidase family M20/M25/M40
`XP_057792696.1`	Pfam	`PF07687`	M20_dimer	Domain	217	326	9.8e-05	23.0	Peptidase dimerisation domain
`XP_057792697.1`	Pfam	`PF01546`	Peptidase_M20	Family	104	437	5.1e-34	118.7	Peptidase family M20/M25/M40
`XP_057792697.1`	Pfam	`PF07687`	M20_dimer	Domain	217	326	9.7e-05	23.0	Peptidase dimerisation domain
`XP_057792698.1`	Pfam	`PF01546`	Peptidase_M20	Family	104	437	5.1e-34	118.7	Peptidase family M20/M25/M40
`XP_057792698.1`	Pfam	`PF07687`	M20_dimer	Domain	217	326	9.7e-05	23.0	Peptidase dimerisation domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057936715.1
AAAAAAAATCAAATAAGAAATGCCCTTGATTCCAAATCCTTGATCACAGCACGCCACCCGACGGCGCGTTTTTCCCACGCGCTAATCGCGGCCGTCTGTGAGAATGTGAGATGCACTCGCCGGCGGAAAAAGAAATAAAAAAGCTGAAAAAAATAGCATCCAATTTGTGTCGTAAGAGGTCAACACTCTACACCAACACTCAGCTGAGCCACAGTTATCTGGCATCAGAAAACTGCGCCGTTTGATTTCTCTCCACTGCT...

XM_057936712.1
ATGCCCTTGATTCCAAATCCTTGATCACAGCACGCCACCCGACGGCGCGTTTTTCCCACGCGCTAATCGCGGCCGTCTGTGAGAATGTGAGATGCACTCGCCGGCGGAAAAAGAAATAAAAAAGCTGAAAAAAATAGCATCCAATTTGTGTCGTAAGAGGTCAACACTCTACACCAACACTCAGCTGAGCCACAGTTATCTGGCATCAGAAAACTGCGCCGTTTGATTTCTCTCCACTGCTTCGCCGCTCCACGCCTTCA...

CDS

4 records

下载 CDS FASTA

LOC131009403
ATGATTGGAACAAGTCATCACTGCCAATCCCTGTATTATTTAGTCTTTCTGGTGGCAGGATTGTTGTTATCGTTACATACTGGGACGATAACTGTGAAAGCCGAGGATTCTTCATCAATCATATCTAGATTTCAGGATTACCTTAGAATAAATACTGCCCAACCCAACCCCAGCTACTATGAAGCTGCTGATTTCATCAGCTCGCAAGCCAAGTCTCTCTCGTTGGATGTCCAAATCTTGGAGTTTGTAAAAGGCAAGCC...

Protein

4 records

下载 Protein FASTA

XP_057792695.1
MIGTSHHCQSLYYLVFLVAGLLLSLHTGTITVKAEDSSSIISRFQDYLRINTAQPNPSYYEAADFISSQAKSLSLDVQILEFVKGKPLLLLKWAGKNPALPSILLNSHTDVVPAEHHKWNHPPFEAHLDPSSGHIYARGSQDMKCVGLQYLEAIRKLQASGFHPLRTVYLTFVPDEEIGGHDGVEKLADSDTFKNMNVGIVLDEGLASPTENYRVFYGERSPWWLVIKATGAPGHGAKLYDNTAMENLLKSIESIRRYRA...

XP_057792696.1
MIGTSHHCQSLYYLVFLVAGLLLSLHTGTITVKAEDSSSIISRFQDYLRINTAQPNPSYYEAADFISSQAKSLSLDVQILEFVKGKPLLLLKWAGKNPALPSILLNSHTDVVPAEHHKWNHPPFEAHLDPSSGHIYARGSQDMKCVGLQYLEAIRKLQASGFHPLRTVYLTFVPDEEIGGHDGVEKLADSDTFKNMNVGIVLDEGLASPTENYRVFYGERSPWWLVIKATGAPGHGAKLYDNTAMENLLKSIESIRRYRA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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