Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005443`

染色体: Chr02 坐标: 74807023-74811315 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005443`
名称	SmilChr02G005443
描述	uncharacterized SmilChr02G005443
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74807023 - 74811315 / `+`

ID 对照

NCBI Gene ID	`LOC131009405`
GeneID	`131009405`
locus_tag	`-`
NCBI Name	`LOC131009405`
原始查询	`LOC131009405`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Source:NCBI gene (formerly Entrezgene);Acc:6241019]; symbol=TRM18; hit=AT2G39435; species=arabidopsis; confidence=low
产物	Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Source:NCBI gene (formerly Entrezgene);Acc:6241019]; symbol=TRM18; hit=AT2G39435; species=arabidopsis; confidence=low
Arabidopsis	`AT2G39435` (TRM18) Phosphatidylinositol N-acetyglucosaminlytransferase subunit P-like protein [Source:NCBI gene (formerly Entrezgene);Acc:6241019] identity=32.4; qcov=0.356; evalue=1.13e-24; confidence=low
Rice	`Os03g0280700` - identity=29.4; qcov=0.36; evalue=4.16e-17; confidence=low
GO	-
KEGG	-
Pfam	PF14309 (DUF4378)
InterPro	-
eggNOG	-
NR	GeneID:131009405

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	0.60000	`XP_057792700.1`
2	Cytoplasm	细胞质	0.40000	`XP_057792700.1`
3	Cell membrane	细胞膜	0.40000	`XP_057792700.1`
4	Chromosome	染色体	0.00000	`XP_057792700.1`
5	Centromere	着丝粒	0.00000	`XP_057792700.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74807688`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C41,D11
`Chr2:74807743`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr2:74807798`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B27,D2
`Chr2:74807830`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B13,C14,D7
`Chr2:74807875`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr2:74808007`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A4
`Chr2:74808086`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B117,B74
`Chr2:74808087`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C46
`Chr2:74808111`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C33
`Chr2:74808126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B140,B22,D1
`Chr2:74808128`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:74808133`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792700.1

728 aa

364

728

DUF4378

PF14309 DUF4378 581-722 aa

XP_057792701.1

728 aa

364

728

DUF4378

PF14309 DUF4378 581-722 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792700.1`	Pfam	`PF14309`	DUF4378	Domain	581	722	1.9e-27	97.3	LONGIFOLIA 1/2-like C-terminal domain
`XP_057792701.1`	Pfam	`PF14309`	DUF4378	Domain	581	722	1.9e-27	97.3	LONGIFOLIA 1/2-like C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057936718.1
TGTGTGTGTGTGTGAGAGAGAGAAGGCTGGTAACTGTATGAGCGCCTACAAATGTAAATTAGTTTACTCTTCAAATTGCTTGCCGAAGCAGGGCGTTGACCGCATTAATGGCGGCGCCTACATGCAAATCAATTTTACGACGATCGACAGCTTTGATTTGATTACGATCGTACAGAATCAGGCTGAAAGCGGAATTGAAGGAGCTCGAGATCACGGCGAGCGTACGGCTGTCTCGCCGCAGCCTGGCGGCGGCGTTTCTG...

XM_057936717.1
GTGTGTGTGTGTGAGAGAGAGAAGGCTGGTAACTGTATGAGCGCCTACAAATGTAAATTAGTTTACTCTTCAAATTGCTTGCCGAAGCAGGGCGTTGACCGCATTAATGGCGGCGCCTACATGCAAATCAATTTTACGACGATCGACAGCTTTGATTTGATTACGATCGTACAGAATCAGGCTGAAAGCGGAATTGAAGGAGCTCGAGATCACGGCGAGCGTACGGCTGTCTCGCCGCAGCCTGGCGGCGGCGTTTCTGT...

CDS

2 records

下载 CDS FASTA

LOC131009405
ATGAAGGATTATCAAGAGAGATGGAAACCAGGCCGCGGAAACAGTGTCATTGCCTCGTTAATGGGTCTTGATGAGCTTCACACTAAGCCGCCGTTTCATGAAAAACGCAGAGGTTTATCTGAAAGCTATGTCCGAAACTCTGCTTCTATAGGCCTACGACCGGGTAGTTTACTTTCCGTTGCTCGTATGTGTAGGGTAGATAATGAGGGAGTGCAGGCCTCCAATATGAGTGAAAATGATAATGTTTCCGATAGATTTTT...

Protein

2 records

下载 Protein FASTA

XP_057792700.1
MKDYQERWKPGRGNSVIASLMGLDELHTKPPFHEKRRGLSESYVRNSASIGLRPGSLLSVARMCRVDNEGVQASNMSENDNVSDRFLNSRSGSFRKGIRYSIGNNDEQKLEHDLLHLGELGMDSMGNSLNSQLEVIDNTRRLSTSIGAFKPGSEKEGTVGYDLKDGELDVHTSVIGNLRHELTHEELPVSSGHSCSACSRAMNRISQQETRRSKFEGLLRYGSYGHHPHRLLQRSSLSNESKKQKLQRWKKMEKKVQGFG...

XP_057792701.1
MKDYQERWKPGRGNSVIASLMGLDELHTKPPFHEKRRGLSESYVRNSASIGLRPGSLLSVARMCRVDNEGVQASNMSENDNVSDRFLNSRSGSFRKGIRYSIGNNDEQKLEHDLLHLGELGMDSMGNSLNSQLEVIDNTRRLSTSIGAFKPGSEKEGTVGYDLKDGELDVHTSVIGNLRHELTHEELPVSSGHSCSACSRAMNRISQQETRRSKFEGLLRYGSYGHHPHRLLQRSSLSNESKKQKLQRWKKMEKKVQGFG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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