当前解析结果
SmilChr02G005461| 统一新 Gene ID | SmilChr02G005461 |
|---|---|
| 名称 | SmilChr02G005461 |
| 描述 | triacylglycerol lipase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74917586 - 74920857 / + |
| NCBI Gene ID | LOC131009421 |
|---|---|
| GeneID | 131009421 |
| locus_tag | - |
| NCBI Name | LOC131009421 |
| 原始查询 | LOC131009421 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | triacylglycerol lipase 2-like |
| 产物 | triacylglycerol lipase 2-like |
| Arabidopsis | AT5G14180 (MPL1)Myzus persicae-induced lipase 1 [Source:NCBI gene (formerly Entrezgene);Acc:831268] identity=49.9; qcov=0.988; evalue=1.29e-141; confidence=high |
| Rice | Os04g0280600 (AM20)- identity=55; qcov=1.07; evalue=1.51e-148; confidence=high |
| GO | GO:0006629 (lipid metabolic process); GO:0016788 (hydrolase activity, acting on ester bonds) |
| KEGG | smil00100 (Steroid biosynthesis - Salvia miltiorrhiza (redroot sage)); smil04142 (Lysosome biogenesis - Salvia miltiorrhiza (redroot sage)); smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00561 (Abhydrolase_1); PF04083 (Abhydro_lipase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009421 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057792721.1 |
| 2 | Lysosome | 溶酶体 | 0.20000 | XP_057792721.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057792721.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792721.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792721.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74917667 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C55 |
Chr2:74918324 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C73 |
Chr2:74918327 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B26,B90,B92 |
Chr2:74918340 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B100,B93,D10 |
Chr2:74918345 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A13,A23,B104,B125,C58 |
Chr2:74918379 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A11,B69,B78,D6 |
Chr2:74918648 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B64,C55 |
Chr2:74918704 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C4,C78,D4 |
Chr2:74918705 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C18 |
Chr2:74919010 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B53 |
Chr2:74919039 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C82 |
Chr2:74919371 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B108,B138,B29,C13,C59 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792721.1PF04083
Abhydro_lipase 44-104 aa
PF00561
Abhydrolase_1 87-363 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792721.1 |
Pfam | PF04083 |
Abhydro_lipase | Family | 44 | 104 | 6.4e-21 | 74.4 | Partial alpha/beta-hydrolase lipase region |
XP_057792721.1 |
Pfam | PF00561 |
Abhydrolase_1 | Domain | 87 | 363 | 6.1e-15 | 56.3 | alpha/beta hydrolase fold |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。