当前解析结果
SmilChr02G005465| 统一新 Gene ID | SmilChr02G005465 |
|---|---|
| 名称 | SmilChr02G005465 |
| 描述 | protein-tyrosine-phosphatase IBR5-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 74945122 - 74948318 / - |
| NCBI Gene ID | LOC131009427 |
|---|---|
| GeneID | 131009427 |
| locus_tag | - |
| NCBI Name | LOC131009427 |
| 原始查询 | LOC131009427 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein-tyrosine-phosphatase IBR5-like |
| 产物 | protein-tyrosine-phosphatase IBR5-like |
| Arabidopsis | AT2G04550 (IBR5)indole-3-butyric acid response 5 [Source:NCBI gene (formerly Entrezgene);Acc:814997] identity=62.8; qcov=1; evalue=2.46e-116; confidence=high |
| Rice | Os06g0308100 (OsIBR5)- identity=62.9; qcov=0.928; evalue=1.41e-103; confidence=high |
| GO | GO:0005634 (nucleus); GO:0006470 (protein dephosphorylation); GO:0008138 (protein tyrosine/serine/threonine phosphatase activity); GO:0009734 (auxin-activated signaling pathway); GO:0009738 (abscisic acid-activated signaling pathway); GO:0033549 (MAP kinase phosphatase activity); GO:0043407 (negative regulation of MAP kinase activity) |
| KEGG | smil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF00782 (DSPc) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009427 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057792726.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057792726.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057792726.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057792726.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057792726.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:74945592 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B125,C28,C58 |
Chr2:74945604 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B76 |
Chr2:74945606 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B75 |
Chr2:74945617 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B23,B48 |
Chr2:74945751 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B69 |
Chr2:74946411 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:74946428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B20,C33 |
Chr2:74946994 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C70 |
Chr2:74947013 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C35 |
Chr2:74947031 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C19 |
Chr2:74947997 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B122,D5 |
Chr2:74948119 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C52 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057792726.1PF00782
DSPc 58-182 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792726.1 |
Pfam | PF00782 |
DSPc | Domain | 58 | 182 | 2.7e-25 | 89.5 | Dual specificity phosphatase, catalytic domain |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。