Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005465

染色体: Chr02 坐标: 74945122-74948318 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005465
名称SmilChr02G005465
描述protein-tyrosine-phosphatase IBR5-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向74945122 - 74948318 / -

ID 对照

NCBI Gene IDLOC131009427
GeneID131009427
locus_tag-
NCBI NameLOC131009427
原始查询LOC131009427

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein-tyrosine-phosphatase IBR5-like
产物protein-tyrosine-phosphatase IBR5-like
ArabidopsisAT2G04550 (IBR5)
indole-3-butyric acid response 5 [Source:NCBI gene (formerly Entrezgene);Acc:814997]
identity=62.8; qcov=1; evalue=2.46e-116; confidence=high
RiceOs06g0308100 (OsIBR5)
-
identity=62.9; qcov=0.928; evalue=1.41e-103; confidence=high
GOGO:0005634 (nucleus); GO:0006470 (protein dephosphorylation); GO:0008138 (protein tyrosine/serine/threonine phosphatase activity); GO:0009734 (auxin-activated signaling pathway); GO:0009738 (abscisic acid-activated signaling pathway); GO:0033549 (MAP kinase phosphatase activity); GO:0043407 (negative regulation of MAP kinase activity)
KEGGsmil04148 (Efferocytosis - Salvia miltiorrhiza (redroot sage))
PfamPF00782 (DSPc)
InterPro-
eggNOG-
NRGeneID:131009427

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 1.00000 XP_057792726.1
2 Nucleus 细胞核 0.80000 XP_057792726.1
3 Cytosol 细胞质基质 0.60000 XP_057792726.1
4 Chromosome 染色体 0.00000 XP_057792726.1
5 Centromere 着丝粒 0.00000 XP_057792726.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:74945592 G A EMS_canonical_SNV CDS_variant 3 B125,C28,C58
Chr2:74945604 C T EMS_canonical_SNV CDS_variant 1 B76
Chr2:74945606 G A EMS_canonical_SNV CDS_variant 1 B75
Chr2:74945617 C T EMS_canonical_SNV CDS_variant 2 B23,B48
Chr2:74945751 G A EMS_canonical_SNV CDS_variant 1 B69
Chr2:74946411 G A EMS_canonical_SNV CDS_variant 1 D11
Chr2:74946428 G A EMS_canonical_SNV CDS_variant 2 B20,C33
Chr2:74946994 C T EMS_canonical_SNV CDS_variant 1 C70
Chr2:74947013 G A EMS_canonical_SNV CDS_variant 1 C35
Chr2:74947031 G A EMS_canonical_SNV CDS_variant 1 C19
Chr2:74947997 G A EMS_canonical_SNV CDS_variant 2 B122,D5
Chr2:74948119 C T EMS_canonical_SNV CDS_variant 1 C52

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792726.1
276 aa
N
1
138
276
DSPc
C
PF00782 DSPc 58-182 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792726.1 Pfam PF00782 DSPc Domain 58 182 2.7e-25 89.5 Dual specificity phosphatase, catalytic domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936743.1
AGCTAATAAACAACTTCAAAATCTCCCCCCAAAAATTCCTAATCACAATTTCCCCAAATTGCCGCATCAAGATTCAGCACACACATATATAAGCATTGATTTGGAAAATTCCTGAAATCGACTGCGCGATTCAATCATGAGGAAGCGAGAGAGAGAGAATCCGTGCGGGATTTGCGGGCACTACCACAAGTACGAGGAAGGGGAGGTGTGCGGCGTCTGCGGCCACCGCATGGCCGCCGTCGCCGACCAACCCGCCGCGG...

CDS

1 records

下载 CDS FASTA
LOC131009427
ATGAGGAAGCGAGAGAGAGAGAATCCGTGCGGGATTTGCGGGCACTACCACAAGTACGAGGAAGGGGAGGTGTGCGGCGTCTGCGGCCACCGCATGGCCGCCGTCGCCGACCAACCCGCCGCGGCGGCAGTCCACGTCAGCGCCTTCCCGTCGGAGATCCTGCCCGAGTTCCTCTACTTGGGCAGCTACGACAATGCTGCCCGCGCTGAGCTGCTCAAAACTCAGAGCATCTCTCGTGTTCTCAATACTGTACCTGCCTG...

Protein

1 records

下载 Protein FASTA
XP_057792726.1
MRKRERENPCGICGHYHKYEEGEVCGVCGHRMAAVADQPAAAAVHVSAFPSEILPEFLYLGSYDNAARAELLKTQSISRVLNTVPACQNLYKNSFTYHCLPDEKRLPFDDAIQFLEQCERDRARVLVHCMSGKNRSPAIVIAYLMKSKGWRLAQSYQWVKERRPSVELNPAAYEQLQEFEQKIFGSTENSNIVLPSFSSPSQPPLSFGFSRTNETPTPAPAFINNTVSSVFSHPPFEIPQEFAFGAGQPQTGAQNDSPFS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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