Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005470`

染色体: Chr02 坐标: 74972118-74974885 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005470`
名称	SmilChr02G005470
描述	bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	74972118 - 74974885 / `+`

ID 对照

NCBI Gene ID	`LOC131009432`
GeneID	`131009432`
locus_tag	`-`
NCBI Name	`LOC131009432`
原始查询	`LOC131009432`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4
产物	bifunctional adenosine 5'-phosphosulfate phosphorylase/adenylylsulfatase HINT4
Arabidopsis	`AT4G16566` (HINT4) histidine triad nucleotide-binding 4 [Source:NCBI gene (formerly Entrezgene);Acc:827357] identity=67.1; qcov=0.973; evalue=3.2e-69; confidence=high
Rice	`Os04g0535400` - identity=66; qcov=0.959; evalue=1.21e-66; confidence=high
GO	GO:0003824 (catalytic activity)
KEGG	smil00920 (Sulfur metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01230 (HIT); PF11969 (DcpS_C)
InterPro	-
eggNOG	-
NR	GeneID:131009432

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792733.1`
2	Endoplasmic reticulum	内质网	0.20000	`XP_057792733.1`
3	Nucleus	细胞核	0.00000	`XP_057792733.1`
4	Chromosome	染色体	0.00000	`XP_057792733.1`
5	Centromere	着丝粒	0.00000	`XP_057792733.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:74972837`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B140,C2,C68,C76,D8
`Chr2:74972863`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B122,B64,B66,C46,C58
`Chr2:74972973`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A18,B119,C26,C74,D6
`Chr2:74973038`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C42
`Chr2:74973059`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D5
`Chr2:74973077`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B10,C20
`Chr2:74973119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B25,B61,B89,C1,C50
`Chr2:74973163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B122,B64,C46

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792733.1

147 aa

147

DcpS_C

HIT

PF11969 DcpS_C 8-120 aa PF01230 HIT 19-109 aa

XP_057792734.1

147 aa

147

DcpS_C

HIT

PF11969 DcpS_C 8-120 aa PF01230 HIT 19-109 aa

XP_057792735.1

147 aa

147

DcpS_C

HIT

PF11969 DcpS_C 8-120 aa PF01230 HIT 19-109 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792733.1`	Pfam	`PF11969`	DcpS_C	Family	8	120	7.9e-30	104.4	Scavenger mRNA decapping enzyme C-term binding
`XP_057792733.1`	Pfam	`PF01230`	HIT	Domain	19	109	4.9e-11	43.8	HIT domain
`XP_057792734.1`	Pfam	`PF11969`	DcpS_C	Family	8	120	7.9e-30	104.4	Scavenger mRNA decapping enzyme C-term binding
`XP_057792734.1`	Pfam	`PF01230`	HIT	Domain	19	109	4.9e-11	43.8	HIT domain
`XP_057792735.1`	Pfam	`PF11969`	DcpS_C	Family	8	120	7.9e-30	104.4	Scavenger mRNA decapping enzyme C-term binding
`XP_057792735.1`	Pfam	`PF01230`	HIT	Domain	19	109	4.9e-11	43.8	HIT domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057936750.1
AACGATTCTATATTAGCGCATAAAATGGTAATGACAAGAGAGAAAAAGAAAATAAAAAAATAAAAGGAAAAAACCCCTAAATCCCCAAATCGTCCACGGCGGCTGTTGCGTCTTCATCCACCGCCACCGGCCACCGGCCACCGGGTCTGCGTCACGTGAAGATATAGAGATATGGATTTGAGTGAATGCAGTTACTGAGTTACCAAGAGATAGGCTATGTCGGGAGCTCTCTCATCGTCGTGCATTTTCTGCCAAATCGC...

XM_057936751.1
AACGATTCTATATTAGCGCATAAAATGGTAATGACAAGAGAGAAAAAGAAAATAAAAAAATAAAAGGAAAAAACCCCTAAATCCCCAAATCGTCCACGGCGGCTGTTGCGTCTTCATCCACCGCCACCGGCCACCGGCCACCGGGTCTGCGTCACGTGAAGATATAGAGATATGGATTTGAGTGAATGCAGTTACTGAGTTACCAAGAGATAGGCTATGTCGGGAGCTCTCTCATCGTCGTGCATTTTCTGCCAAATCGC...

CDS

3 records

下载 CDS FASTA

LOC131009432
ATGTCGGGAGCTCTCTCATCGTCGTGCATTTTCTGCCAAATCGCCCGTGCCTCGACCCCAGCAACCATCCTTCACCAGGACGACAAGGTGGTCGCGTTCCAAGACATCAATCCATCCGCATTGAGGCATTATCTGGTCATCCCAGTCGAGCACATACCGACTGTCAAGAAACTCCGGAGAAGGTCCGAGGACTTTGCTCTGGTCAGCAACATGCTGGATGTCGGCCGAGCTCTGCTGCAGAGGGACGCGCCTCATGCTGA...

Protein

3 records

下载 Protein FASTA

XP_057792733.1
MSGALSSSCIFCQIARASTPATILHQDDKVVAFQDINPSALRHYLVIPVEHIPTVKKLRRRSEDFALVSNMLDVGRALLQRDAPHAEQYRFGFHQPPFNSVDHLHLHCFALPYTPRWRAMKYLSLGPFVGFIEAEKLLERIKPPAFL

XP_057792734.1
MSGALSSSCIFCQIARASTPATILHQDDKVVAFQDINPSALRHYLVIPVEHIPTVKKLRRRSEDFALVSNMLDVGRALLQRDAPHAEQYRFGFHQPPFNSVDHLHLHCFALPYTPRWRAMKYLSLGPFVGFIEAEKLLERIKPPAFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器