Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005508`

染色体: Chr02 坐标: 75199867-75203331 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005508`
名称	SmilChr02G005508
描述	receptor-like protein EIX1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75199867 - 75203331 / `+`

ID 对照

NCBI Gene ID	`LOC131009441`
GeneID	`131009441`
locus_tag	`-`
NCBI Name	`LOC131009441`
原始查询	`LOC131009441`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX1
产物	receptor-like protein EIX1
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=37.3; qcov=0.973; evalue=1.28e-156; confidence=medium
Rice	`Os11g0564900` - identity=34.8; qcov=1.1; evalue=1.06e-160; confidence=low
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8)
InterPro	-
eggNOG	-
NR	GeneID:131009441

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792744.1`
2	Nucleus	细胞核	0.00000	`XP_057792744.1`
3	Chromosome	染色体	0.00000	`XP_057792744.1`
4	Centromere	着丝粒	0.00000	`XP_057792744.1`
5	Chromatin	染色质	0.00000	`XP_057792744.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75200326`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B70
`Chr2:75200326`	`G`	`GA`	1bp_insertion	CDS_variant	1	B70
`Chr2:75200327`	`G`	`GA`	1bp_insertion	frameshift_variant	1	B70
`Chr2:75200327`	`G`	`GA`	1bp_insertion	CDS_variant	1	B70
`Chr2:75200403`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C13,C4,C63
`Chr2:75200448`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr2:75200451`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C6
`Chr2:75200516`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A18,C14
`Chr2:75200519`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B40,C46
`Chr2:75200603`	`GA`	`G`	1bp_deletion	frameshift_variant	6	B111,B26,B28,C42,C77,C84
`Chr2:75200618`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B123,C5,C55,C59
`Chr2:75200625`	`C`	`CT`	1bp_insertion	frameshift_variant	37	A11,A18,A23,A24,A25,A4,B10,B108,B110,B125,B137,B140,B22,B35,B50,B56,B61,B65,B67,B86,B96,B97,C12,C16,C17,C18,C23,C30,C33,C49,C57,C71,C76,C9,D1,D3,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792744.1

943 aa

472

943

LRRNT_2

LRR_6

LRR_1

LRR_6

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

LRR_6

LRR_1

PF08263 LRRNT_2 33-69 aa PF13516 LRR_6 101-114 aa PF00560 LRR_1 102-123 aa PF00560 LRR_1 127-149 aa PF13516 LRR_6 149-165 aa PF00560 LRR_1 151-172 aa PF13516 LRR_6 248-263 aa PF00560 LRR_1 250-269 aa PF00560 LRR_1 276-297 aa PF13855 LRR_8 352-412 aa PF00560 LRR_1 377-394 aa PF00560 LRR_1 543-561 aa PF00560 LRR_1 566-587 aa PF00560 LRR_1 641-661 aa PF00560 LRR_1 744-765 aa PF00560 LRR_1 768-788 aa PF13516 LRR_6 791-805 aa PF00560 LRR_1 792-813 aa PF00560 LRR_1 816-833 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792744.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	8.5e-12	45.9	Leucine rich repeat N-terminal domain
`XP_057792744.1`	Pfam	`PF13516`	LRR_6	Repeat	101	114	5.5e-08	33.0	Leucine Rich repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	102	123	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF13516`	LRR_6	Repeat	149	165	5.5e-08	33.0	Leucine Rich repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	151	172	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF13516`	LRR_6	Repeat	248	263	5.5e-08	33.0	Leucine Rich repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	250	269	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	276	297	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF13855`	LRR_8	Repeat	352	412	5.1e-37	126.2	Leucine rich repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	377	394	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	543	561	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	566	587	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	641	661	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	744	765	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	768	788	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF13516`	LRR_6	Repeat	791	805	5.5e-08	33.0	Leucine Rich repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	792	813	1.6e-55	173.7	Leucine Rich Repeat
`XP_057792744.1`	Pfam	`PF00560`	LRR_1	Repeat	816	833	1.6e-55	173.7	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936761.1
GTGTCCAAACCAGATCACTTCCACATATATTTAAAAATATGATTTCTTATAGAGGAATAGCAATCAAATTTCTTCTTTTGGTTCTGATCATTGAGTTTGTTGCAGGAGATGATGCAAAATTTCTTCTCGTCATGGCGAAGTGACGAATGCTGCATATAATTAACGTGCTTCACGTTCTTTTGTCAATTTTATTGGCTTACATTACATGCTTCACGTTTGAATCGAATATCATTTCATACAAATAGTGTGAAAGAGAGAAT...

CDS

1 records

下载 CDS FASTA

LOC131009441
ATGATTTCTAATAGAGGAATAGCAATCAAATTTATTCTTTTTGTTCTAGTTTGTGTCTTTGTTTCAGGAGATGATGCAGAAGTGAGATGCATAGCGAGGGATAGAGAAGCACTTCTGAGCTTTAAGAACAGCCTCATCAGTGATGCTAGTTTTCTCTCGTCATGGCGAAGTGACGAATGCTGCGAATGGTACGGTGTTGAGTGCAGCAACACCACTCGCCATGTCATCGCCCTCCAACTTAATACTTGTGATTTGGAAGG...

Protein

1 records

下载 Protein FASTA

XP_057792744.1
MISNRGIAIKFILFVLVCVFVSGDDAEVRCIARDREALLSFKNSLISDASFLSSWRSDECCEWYGVECSNTTRHVIALQLNTCDLEGVLRGKVGSSLLELHHLSYLDLSCNDFEGNSIPEFIGSMKQLQHLFLKDSHFSGIIPPQIGNLTNLRSLDLSYNSLTTENLDWLSSFSLLSFLGLSQIDLSHTNWLQHILRLHSLNELHLNSCNLKDSKPFLNSSSKSHLSILGVSDNNLTSSSLDWLSNLNTSLVEIDLSHNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器