Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005507`

染色体: Chr02 坐标: 75195028-75198078 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005507`
名称	SmilChr02G005507
描述	receptor-like protein EIX1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75195028 - 75198078 / `+`

ID 对照

NCBI Gene ID	`LOC131009442`
GeneID	`131009442`
locus_tag	`-`
NCBI Name	`LOC131009442`
原始查询	`LOC131009442`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX1
产物	receptor-like protein EIX1
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=35.8; qcov=0.978; evalue=2.05e-145; confidence=medium
Rice	`Os11g0564900` - identity=34.9; qcov=1.08; evalue=9.86e-156; confidence=low
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131009442

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792745.1`
2	Nucleus	细胞核	0.00000	`XP_057792745.1`
3	Chromosome	染色体	0.00000	`XP_057792745.1`
4	Centromere	着丝粒	0.00000	`XP_057792745.1`
5	Chromatin	染色质	0.00000	`XP_057792745.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75195103`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B55,B96,C73,D3
`Chr2:75195150`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A24,B55,C73,C80,D3
`Chr2:75195162`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C69,C8,C83
`Chr2:75195175`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:75195194`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B57,C21
`Chr2:75195217`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B8,B86,C29,C59
`Chr2:75195222`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	C34,C48
`Chr2:75195222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C34,C48
`Chr2:75195252`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B55,C73,C80
`Chr2:75195285`	`T`	`TTA`	2bp_insertion	frameshift_variant	1	C45
`Chr2:75195285`	`T`	`TTA`	2bp_insertion	CDS_variant	1	C45
`Chr2:75195290`	`AAG`	`A`	2bp_deletion	frameshift_variant	9	B119,B122,B21,B3,B35,C37,C44,C74,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792745.1

938 aa

469

938

LRRNT_2

LRR_14

LRR_1

LRR_6

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 33-69 aa PF23598 LRR_14 78-314 aa PF00560 LRR_1 102-121 aa PF13516 LRR_6 149-165 aa PF00560 LRR_1 151-172 aa PF00560 LRR_1 226-247 aa PF00560 LRR_1 276-297 aa PF13855 LRR_8 352-412 aa PF00560 LRR_1 353-374 aa PF00560 LRR_1 377-393 aa PF00560 LRR_1 542-563 aa PF13855 LRR_8 542-601 aa PF00560 LRR_1 567-588 aa PF00560 LRR_1 591-610 aa PF00560 LRR_1 638-660 aa PF00560 LRR_1 739-760 aa PF13855 LRR_8 739-797 aa PF00560 LRR_1 787-808 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792745.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	3.1e-11	44.1	Leucine rich repeat N-terminal domain
`XP_057792745.1`	Pfam	`PF23598`	LRR_14	Repeat	78	314	3.1e-33	115.7	Leucine-rich repeat region
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	102	121	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF13516`	LRR_6	Repeat	149	165	1.5e-06	28.5	Leucine Rich repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	151	172	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	226	247	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	276	297	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF13855`	LRR_8	Repeat	352	412	4.8e-48	161.5	Leucine rich repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	353	374	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	377	393	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	542	563	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF13855`	LRR_8	Repeat	542	601	4.8e-48	161.5	Leucine rich repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	567	588	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	591	610	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	638	660	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	739	760	1.9e-57	179.4	Leucine Rich Repeat
`XP_057792745.1`	Pfam	`PF13855`	LRR_8	Repeat	739	797	4.8e-48	161.5	Leucine rich repeat
`XP_057792745.1`	Pfam	`PF00560`	LRR_1	Repeat	787	808	1.9e-57	179.4	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936762.1
GAAAGCATGATTTCTGATAAAGGAATAGCAATCAAATTTCTTCTTTTTGTTCTAGTTTGTGTCTTTGTTTCAGGAGATGACACAGAAGTGAGATGCATAGAGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAACAGCCTCATCGGTGATGATGGTATTCTCTCGTCATGGCGAAGTGACGAATGCTGCGAATGGTACGGTGTTGAGTGCAGCAACACCACTCGCCATGTCATCGCCCTCCAACTTAATGCTTGTGATTT...

CDS

1 records

下载 CDS FASTA

LOC131009442
ATGATTTCTGATAAAGGAATAGCAATCAAATTTCTTCTTTTTGTTCTAGTTTGTGTCTTTGTTTCAGGAGATGACACAGAAGTGAGATGCATAGAGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAACAGCCTCATCGGTGATGATGGTATTCTCTCGTCATGGCGAAGTGACGAATGCTGCGAATGGTACGGTGTTGAGTGCAGCAACACCACTCGCCATGTCATCGCCCTCCAACTTAATGCTTGTGATTTGGAAGG...

Protein

1 records

下载 Protein FASTA

XP_057792745.1
MISDKGIAIKFLLFVLVCVFVSGDDTEVRCIEREREALLSFKNSLIGDDGILSSWRSDECCEWYGVECSNTTRHVIALQLNACDLEGGLQGKVGSSLLELHHLNYLDLSCNYFGGNPIPEFIGSMKQLQHLFLKYSHFSGIIPPQIRNLTNLRSLDLSYNSLTTENLDWLSSFSLLSFLGLSQIDLSHTNWLQHITSLHSLYELHLKSCGLKDNKPSSNSSSTSLLSIIDLSYNNLTSSSFDWLSNMNTSLVEIDLSGNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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