Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005512`

染色体: Chr02 坐标: 75239169-75242306 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005512`
名称	SmilChr02G005512
描述	receptor-like protein EIX1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75239169 - 75242306 / `-`

ID 对照

NCBI Gene ID	`LOC131009477`
GeneID	`131009477`
locus_tag	`-`
NCBI Name	`LOC131009477`
原始查询	`LOC131009477`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX1
产物	receptor-like protein EIX1
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=36.6; qcov=0.972; evalue=1.56e-149; confidence=medium
Rice	`Os01g0601675` - identity=37.1; qcov=1; evalue=6.41e-158; confidence=medium
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131009477

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792805.1`
2	Nucleus	细胞核	0.00000	`XP_057792805.1`
3	Chromosome	染色体	0.00000	`XP_057792805.1`
4	Centromere	着丝粒	0.00000	`XP_057792805.1`
5	Chromatin	染色质	0.00000	`XP_057792805.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75239436`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B119,B131
`Chr2:75239437`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B90,C59,C76
`Chr2:75239439`	`TC`	`T`	1bp_deletion	frameshift_variant	1	C4
`Chr2:75239439`	`TC`	`T`	1bp_deletion	CDS_variant	1	C4
`Chr2:75239440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:75239441`	`G`	`A`	EMS_canonical_SNV	stop_gained	11	A23,A6,B110,B14,B25,B52,B57,C25,C46,C49,C80
`Chr2:75239443`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C81
`Chr2:75239470`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:75239552`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B130,B14,B44,C31
`Chr2:75239596`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B73,C20
`Chr2:75239598`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	C14,C4,C76
`Chr2:75239625`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A7,B34,C13,C14,C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792805.1

943 aa

472

943

LRRNT_2

LRR_14

LRR_6

LRR_1

LRR_8

LRR_1

LRR_8

LRR_4

LRR_1

PF08263 LRRNT_2 33-69 aa PF23598 LRR_14 78-310 aa PF13516 LRR_6 101-115 aa PF00560 LRR_1 127-149 aa PF13855 LRR_8 127-183 aa PF00560 LRR_1 151-173 aa PF00560 LRR_1 226-247 aa PF00560 LRR_1 276-297 aa PF00560 LRR_1 329-346 aa PF13855 LRR_8 352-412 aa PF12799 LRR_4 473-511 aa PF00560 LRR_1 496-513 aa PF00560 LRR_1 542-563 aa PF00560 LRR_1 566-587 aa PF00560 LRR_1 616-637 aa PF00560 LRR_1 639-660 aa PF00560 LRR_1 744-764 aa PF00560 LRR_1 768-788 aa PF00560 LRR_1 792-813 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792805.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	2.9e-11	44.1	Leucine rich repeat N-terminal domain
`XP_057792805.1`	Pfam	`PF23598`	LRR_14	Repeat	78	310	5e-29	101.9	Leucine-rich repeat region
`XP_057792805.1`	Pfam	`PF13516`	LRR_6	Repeat	101	115	5.9e-09	36.0	Leucine Rich repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF13855`	LRR_8	Repeat	127	183	1.2e-45	153.8	Leucine rich repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	151	173	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	226	247	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	276	297	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	329	346	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF13855`	LRR_8	Repeat	352	412	1.2e-45	153.8	Leucine rich repeat
`XP_057792805.1`	Pfam	`PF12799`	LRR_4	Repeat	473	511	2.1e-36	123.8	Leucine Rich repeats (2 copies)
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	496	513	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	542	563	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	566	587	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	616	637	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	639	660	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	744	764	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	768	788	2.4e-54	170.2	Leucine Rich Repeat
`XP_057792805.1`	Pfam	`PF00560`	LRR_1	Repeat	792	813	2.4e-54	170.2	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936822.1
TTCCACAAACATATATCTCTTCCACTCATCAACAGAGAAAGCATGATTTCTGATAAAGGAATATCAATCAAATTTCTTCTTTTTTTTCTACTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAACAGCCTCATCGGCGATGATGGTATTCTCTCGTCATGGCGAAGTGACGAATGCTGTGAATGGTATGGTGTTGAATGCAGCAACACCACTCG...

CDS

1 records

下载 CDS FASTA

LOC131009477
ATGATTTCTGATAAAGGAATATCAATCAAATTTCTTCTTTTTTTTCTACTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAACAGCCTCATCGGCGATGATGGTATTCTCTCGTCATGGCGAAGTGACGAATGCTGTGAATGGTATGGTGTTGAATGCAGCAACACCACTCGCCATGTCATCACTCTCCAACTTAATGCTTGTGATTTGGAAGG...

Protein

1 records

下载 Protein FASTA

XP_057792805.1
MISDKGISIKFLLFFLLCVYVSGDDAEVRCIAREREALLSFKNSLIGDDGILSSWRSDECCEWYGVECSNTTRHVITLQLNACDLEGALRGKVGSSLLELHHLSYLDLSCNDFGGNPVPEFIGSMKQLHHLYLRNSYFSGIIPPQIGNLTNLRSLGLSRNSLTTENLDWLSNLSLLSFLDLSQIDLSHTNWLQHIPSLHSLYELHLKSCGLKDNKPSSNSSSTSLLSILDLSHNNLTLSSFDWLSNLNTSLVEIDLSHNA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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