Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005516`

染色体: Chr02 坐标: 75261693-75265152 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005516`
名称	SmilChr02G005516
描述	receptor-like protein EIX2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75261693 - 75265152 / `-`

ID 对照

NCBI Gene ID	`LOC131009479`
GeneID	`131009479`
locus_tag	`-`
NCBI Name	`LOC131009479`
原始查询	`LOC131009479`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX2
产物	receptor-like protein EIX2
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=34.3; qcov=1.04; evalue=1.09e-102; confidence=low
Rice	`Os01g0601625` - identity=32.4; qcov=1.19; evalue=1.38e-96; confidence=low
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131009479

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792807.1`
2	Nucleus	细胞核	0.00000	`XP_057792807.1`
3	Chromosome	染色体	0.00000	`XP_057792807.1`
4	Centromere	着丝粒	0.00000	`XP_057792807.1`
5	Chromatin	染色质	0.00000	`XP_057792807.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75262868`	`A`	`AC`	1bp_insertion	frameshift_variant	71	A10,A14,A15,A16,A18,A4,A6,A8,B104,B105,B106,B111,B112,B118,B122,B125,B128,B131,B132,B134,B140,B16,B26,B28,B3,B33,B36,B39,B41,B50,B52,B60,B64,B69,B72,B76,B77,B81,B84,B87,B9,B91,B96,B97,B99,C10,C13,C18,C2,C20,C26,C27,C30,C32,C33,C34,C40,C44,C46,C5,C52,C56,C61,C70,C71,C72,C73,C74,C79,C84,D1
`Chr2:75262953`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A2,B44,B76,B81
`Chr2:75263044`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B62,B63,C81
`Chr2:75263051`	`TG`	`T`	1bp_deletion	frameshift_variant	5	A7,B110,B117,B61,C34
`Chr2:75263051`	`TG`	`T`	1bp_deletion	CDS_variant	5	A7,B110,B117,B61,C34
`Chr2:75263053`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C26
`Chr2:75263106`	`G`	`A`	EMS_canonical_SNV	stop_gained	2	A18,B110
`Chr2:75263106`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B110
`Chr2:75263108`	`AGT`	`A`	2bp_deletion	frameshift_variant	1	C63
`Chr2:75263108`	`AGT`	`A`	2bp_deletion	CDS_variant	1	C63
`Chr2:75263109`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A18,B110
`Chr2:75263111`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B8,C76

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792807.1

752 aa

376

752

LRRNT_2

LRR_14

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 33-69 aa PF23598 LRR_14 95-319 aa PF00560 LRR_1 102-121 aa PF00560 LRR_1 127-149 aa PF00560 LRR_1 201-222 aa PF13855 LRR_8 201-256 aa PF00560 LRR_1 224-246 aa PF00560 LRR_1 323-342 aa PF00560 LRR_1 349-370 aa PF00560 LRR_1 572-586 aa PF00560 LRR_1 617-637 aa PF00560 LRR_1 640-662 aa PF00560 LRR_1 715-734 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792807.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	3.5e-11	43.9	Leucine rich repeat N-terminal domain
`XP_057792807.1`	Pfam	`PF23598`	LRR_14	Repeat	95	319	1.3e-33	117.0	Leucine-rich repeat region
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	102	121	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	201	222	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF13855`	LRR_8	Repeat	201	256	5.4e-35	119.7	Leucine rich repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	224	246	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	323	342	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	349	370	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	572	586	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	617	637	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	640	662	1.1e-41	132.5	Leucine Rich Repeat
`XP_057792807.1`	Pfam	`PF00560`	LRR_1	Repeat	715	734	1.1e-41	132.5	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936824.1
TTCCACAAACATATATCACTTCCACACATCAATAGAGAAAGCATGATTTCTGATAAAGGAATATCAATCAAATTTATTCTTTTTGTTCTAGTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAATGGCCTCATCGGCGATGATGGTTTTCTCTCGTCATGGCGAAGTGACGAATGCTGTGAATGGTATGGTGTTGAGTGCAGCAACACGACTCG...

CDS

1 records

下载 CDS FASTA

LOC131009479
ATGATTTCTGATAAAGGAATATCAATCAAATTTATTCTTTTTGTTCTAGTTTGTGTCTATGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAATGGCCTCATCGGCGATGATGGTTTTCTCTCGTCATGGCGAAGTGACGAATGCTGTGAATGGTATGGTGTTGAGTGCAGCAACACGACTCGCCATGTCATCGCCCTCCAACTTAATGCTTGTCATTATTATGG...

Protein

1 records

下载 Protein FASTA

XP_057792807.1
MISDKGISIKFILFVLVCVYVSGDDAEVRCIAREREALLSFKNGLIGDDGFLSSWRSDECCEWYGVECSNTTRHVIALQLNACHYYGGLQGKVGSSLLELHHLNYLDLSCNDFGGNSIPAFIGSMKQLQHLYLKYSHFSGIIPPQLGNLTNLLSLDLSFNSLTTENLIWLSNLSSLSYLHLSQIDLSHPNSLQHISSLHFLYELHLYSCGLKGTIPSQIGNLTNLRSLDLSHNSLTTENLDWLSNLSLLSYLDLSQIDLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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