Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005521`

染色体: Chr02 坐标: 75302402-75306106 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005521`
名称	SmilChr02G005521
描述	receptor-like protein EIX2
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75302402 - 75306106 / `-`

ID 对照

NCBI Gene ID	`LOC131009482`
GeneID	`131009482`
locus_tag	`-`
NCBI Name	`LOC131009482`
原始查询	`LOC131009482`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	receptor-like protein EIX2
产物	receptor-like protein EIX2
Arabidopsis	`AT2G34930` (AT2G34930) disease resistance family protein / LRR family protein [Source:NCBI gene (formerly Entrezgene);Acc:818058] identity=33.7; qcov=0.975; evalue=8.88e-123; confidence=low
Rice	`Os01g0601625` - identity=33.4; qcov=1.14; evalue=2.06e-146; confidence=low
GO	GO:0005515 (protein binding)
KEGG	smil04626 (Plant-pathogen interaction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00560 (LRR_1); PF08263 (LRRNT_2); PF13855 (LRR_8); PF23598 (LRR_14)
InterPro	-
eggNOG	-
NR	GeneID:131009482

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057792810.1`
2	Nucleus	细胞核	0.00000	`XP_057792810.1`
3	Chromosome	染色体	0.00000	`XP_057792810.1`
4	Centromere	着丝粒	0.00000	`XP_057792810.1`
5	Chromatin	染色质	0.00000	`XP_057792810.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75303109`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B135,B67
`Chr2:75303134`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C49
`Chr2:75303158`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C59
`Chr2:75303181`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:75303197`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C27
`Chr2:75303207`	`AAG`	`A`	2bp_deletion	frameshift_variant	4	B122,B76,B86,C49
`Chr2:75303207`	`AAG`	`A`	2bp_deletion	CDS_variant	4	B122,B76,B86,C49
`Chr2:75303212`	`C`	`CCG`	2bp_insertion	frameshift_variant	4	B122,B86,C49,C9
`Chr2:75303212`	`C`	`CCG`	2bp_insertion	CDS_variant	4	B122,B86,C49,C9
`Chr2:75303290`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A3,B32,B69,C1,C13
`Chr2:75303324`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B55,C84
`Chr2:75303330`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A3,B98,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792810.1

1010 aa

505

1010

LRRNT_2

LRR_14

LRR_1

LRR_8

LRR_1

PF08263 LRRNT_2 33-69 aa PF23598 LRR_14 95-321 aa PF00560 LRR_1 127-149 aa PF00560 LRR_1 151-173 aa PF00560 LRR_1 200-222 aa PF00560 LRR_1 224-246 aa PF00560 LRR_1 323-342 aa PF00560 LRR_1 349-370 aa PF00560 LRR_1 426-447 aa PF13855 LRR_8 426-484 aa PF00560 LRR_1 450-466 aa PF00560 LRR_1 570-586 aa PF00560 LRR_1 640-661 aa PF00560 LRR_1 689-711 aa PF00560 LRR_1 713-735 aa PF00560 LRR_1 738-759 aa PF00560 LRR_1 816-837 aa PF00560 LRR_1 840-860 aa PF00560 LRR_1 864-885 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792810.1`	Pfam	`PF08263`	LRRNT_2	Family	33	69	3.4e-11	43.9	Leucine rich repeat N-terminal domain
`XP_057792810.1`	Pfam	`PF23598`	LRR_14	Repeat	95	321	1.5e-34	120.0	Leucine-rich repeat region
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	127	149	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	151	173	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	200	222	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	224	246	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	323	342	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	349	370	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	426	447	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF13855`	LRR_8	Repeat	426	484	2.4e-40	136.8	Leucine rich repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	450	466	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	570	586	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	640	661	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	689	711	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	713	735	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	738	759	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	816	837	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	840	860	4.4e-53	166.4	Leucine Rich Repeat
`XP_057792810.1`	Pfam	`PF00560`	LRR_1	Repeat	864	885	4.4e-53	166.4	Leucine Rich Repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936827.1
ACTTATCATGAATTATCTTCAAACAATTTCTATATTATTTGCGATTATAACTTAGTCACGCTTCACTTTCTTGTTTTGTCTTTCAAGTCGACTTGCAAGTAATCGAAGCAAGTCTGTTTAATTTCATTGTTAGGAAAGGGAGGGAAGAGGTATGCTTTGGCCTATTTAAACCATCCAACTTGAGACTATGGAGTATCCCACAAACATATATCTCTTCCACTCATCAATAGAGGAACCATGATTTCTAATAAAGGAATTCC...

CDS

1 records

下载 CDS FASTA

LOC131009482
ATGATTTCTAATAAAGGAATTCCAATCAAATTTCTTCTTCTTGTTCTAGTTTGTGTCTTTGTTTCAGGAGATGATGCAGAAGTGAGATGCATTGCGAGGGAGAGAGAAGCTCTTCTGAGCTTCAAGAATGGCCTCATCGGCGATGATGGTTTTCTCTCATCATGGCGAAGTGACGAATGCTGTGAATGGTATGGTGTTGAGTGCAGCAACACGACTCGCCATGTCATCGCCCTCCAACTTAATGCTTGTCATTATTATGG...

Protein

1 records

下载 Protein FASTA

XP_057792810.1
MISNKGIPIKFLLLVLVCVFVSGDDAEVRCIAREREALLSFKNGLIGDDGFLSSWRSDECCEWYGVECSNTTRHVIALQLNACHYYGGLQGKVGSSLLELHHLNNLDLSCNDFGGYSIPEFIGSMKQLQHLFLKDSHFSGIIPPQIGNLTNLRSLDLSSNPLTTENLDRLSNLSLLSSLDLSEIDLSETNWLQHISSLHSLNELHLKSCGLKGTLPSQIGNLTNLRSLDLSSNPLKTENLDWLSNLSLLSSLDLSEIDLS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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