Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005529`

染色体: Chr02 坐标: 75354839-75356191 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005529`
名称	SmilChr02G005529
描述	glycine-rich cell wall structural protein-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75354839 - 75356191 / `-`

ID 对照

NCBI Gene ID	`LOC131009486`
GeneID	`131009486`
locus_tag	`-`
NCBI Name	`LOC131009486`
原始查询	`LOC131009486`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Arabidopsis/Rice homolog
描述	glycine-rich cell wall structural protein-like
产物	glycine-rich cell wall structural protein-like
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131009486

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Secreted	分泌到胞外	1.00000	`XP_057792815.1`
2	Nucleus	细胞核	0.00000	`XP_057792815.1`
3	Chromosome	染色体	0.00000	`XP_057792815.1`
4	Centromere	着丝粒	0.00000	`XP_057792815.1`
5	Chromatin	染色质	0.00000	`XP_057792815.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75355029`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B57,C67,C74
`Chr2:75355037`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A10
`Chr2:75355050`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A22,B48,B5,B93
`Chr2:75355059`	`C`	`CA`	1bp_insertion	frameshift_variant	14	A10,A22,A25,B109,B133,B48,B55,B93,C15,C28,C45,C58,C77,C87
`Chr2:75355066`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B7,C1,C4
`Chr2:75355078`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B115,B128,B75,C56,D6
`Chr2:75355105`	`ACC`	`*`	2bp_deletion	CDS_variant	2	C40,D7
`Chr2:75355119`	`CT`	`C`	1bp_deletion	frameshift_variant	6	A23,B41,B75,C28,C34,D2
`Chr2:75355200`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B106,C21
`Chr2:75355204`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr2:75355269`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B55,C15,C28,C7
`Chr2:75355570`	`TC`	`T`	1bp_deletion	frameshift_variant	3	A15,B71,C45

进入 EMS 突变库

预测功能结构域

当前发布数据中，此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

18 records

下载 cDNA FASTA

XM_057936845.1
CACCAACATTCTCATCCTAAACAAAAAATACAACTATTTCACAACTCGAAGAAAAATGAATTCCAAACCGATTGTTCTTCTCGGCCTTTTAGCTCTTCTAGTTTCTTCAGAAGTAGTTTCAGCCAGCAGAGAACTCGCTGAGAAAACTAATGCCGTCGATCCATCTGAGAAAACCAACGGAGATGCGGCCAAAGACCAAGGTGGATATGGAGGTTTTCCCGGCGGCGGAAATGGAGGTTTTCCGGGCCGCGGTAATGGAG...

XM_057936836.1
ACCAACATTCTCATCCTAAACAAAAAATACAACTATTTCACAACTCGAAGAAAAATGAATTCCAAACCGATTGTTCTTCTCGGCCTTTTAGCTCTTCTAGTTTCTTCAGAAGTAGTTTCAGCCAGCAGAGAACTCGCTGAGAAAACTAATGCCGTCGATCCATCTGAGAAAACCAACGGAGATGCGGCCAAAGACCAAGGTGGATATGGAGGTTTTCCCGGCGGCGGAAATGGAGGTTTTCCGGGCCGCGGTAATGGAGG...

CDS

18 records

下载 CDS FASTA

LOC131009486
ATGAATTCCAAACCGATTGTTCTTCTCGGCCTTTTAGCTCTTCTAGTTTCTTCAGAAGTAGTTTCAGCCAGCAGAGAACTCGCTGAGAAAACTAATGCCGTCGATCCATCTGAGAAAACCAACGGAGATGCGGCCAAAGACCAAGGTGGATATGGAGGTTTTCCCGGCGGCGGAAATGGAGGTTTTCCGGGCCGCGGTAATGGAGGTTTTCCCGGCGGCGGAAATGGAGGTTTCCCGGGCGGCGGAAATGGGGGTTTTCC...

Protein

18 records

下载 Protein FASTA

XP_057792815.1
MNSKPIVLLGLLALLVSSEVVSASRELAEKTNAVDPSEKTNGDAAKDQGGYGGFPGGGNGGFPGRGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGRGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGRGNGGFPGGGNGGFPGGGNGGFPEGGNGGFPGGGNGGFPGGGNGGFPGGGNGGNGGFPGGGSGGFPGGGNGGFPGGGNGGFPGGGNGGFPGG...

XP_057792816.1
MNSKPIVLLGLLALLVSSEVVSASRELAEKTNAVDPSEKTNGDAAKDQGGYGGFPGGGNGGFPGRGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGRGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGFPGRGNGGFPGGGNGGFPGGGNGGFPEGGNGGFPGGGNGGFPGGGNGGFPGGGSGGFPGGGNGGFPGGGNGGFPGGGNGGFPGGGNGGNGGFPGG...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器