当前解析结果
SmilChr02G005538| 统一新 Gene ID | SmilChr02G005538 |
|---|---|
| 名称 | SmilChr02G005538 |
| 描述 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 75408257 - 75411882 / - |
| NCBI Gene ID | LOC131009497 |
|---|---|
| GeneID | 131009497 |
| locus_tag | - |
| NCBI Name | LOC131009497 |
| 原始查询 | LOC131009497 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase-like |
| 产物 | 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase-like |
| Arabidopsis | AT3G08590 (iPGAM2)Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent [Source:NCBI gene (formerly Entrezgene);Acc:820006] identity=83.7; qcov=1; evalue=0; confidence=high |
| Rice | Os01g0817700 (BPM)- identity=85.5; qcov=1; evalue=0; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0006007 (glucose catabolic process); GO:0030145 (manganese ion binding); GO:0046537 (GO:0046537) |
| KEGG | smil00010 (Glycolysis / Gluconeogenesis - Salvia miltiorrhiza (redroot sage)); smil00260 (Glycine, serine and threonine metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01230 (Biosynthesis of amino acids - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF01676 (Metalloenzyme); PF06415 (iPGM_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009497 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytosol | 细胞质基质 | 1.00000 | XP_057792845.1 |
| 2 | Cytoplasm | 细胞质 | 0.80000 | XP_057792845.1 |
| 3 | Nucleoplasm | 核质 | 0.20000 | XP_057792845.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057792845.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057792845.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:75408459 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B104,D10 |
Chr2:75408482 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B50,C14,C42,D10 |
Chr2:75408524 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr2:75408533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B115,C25 |
Chr2:75408576 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr2:75408599 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B42,B43 |
Chr2:75408820 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B93 |
Chr2:75408865 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B50,C42 |
Chr2:75408878 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B137,C71 |
Chr2:75408948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C59,C78 |
Chr2:75409165 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B50,C14,C42 |
Chr2:75409168 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B4,C16,C53,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057792845.1PF01676
Metalloenzyme 20-544 aa
PF06415
iPGM_N 102-322 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057792845.1 |
Pfam | PF01676 |
Metalloenzyme | Family | 20 | 544 | 7.7e-87 | 291.7 | Metalloenzyme superfamily |
XP_057792845.1 |
Pfam | PF06415 |
iPGM_N | Domain | 102 | 322 | 2.2e-59 | 201.3 | BPG-independent PGAM N-terminus (iPGM_N) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。