Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005543`

染色体: Chr02 坐标: 75436440-75440642 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005543`
名称	SmilChr02G005543
描述	BTB/POZ domain and ankyrin repeat-containing protein NPR1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75436440 - 75440642 / `-`

ID 对照

NCBI Gene ID	`LOC131009504`
GeneID	`131009504`
locus_tag	`-`
NCBI Name	`LOC131009504`
原始查询	`LOC131009504`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	BTB/POZ domain and ankyrin repeat-containing protein NPR1-like
产物	BTB/POZ domain and ankyrin repeat-containing protein NPR1-like
Arabidopsis	`AT5G45110` (NPR3) NPR1-like protein 3 [Source:NCBI gene (formerly Entrezgene);Acc:834545] identity=52.3; qcov=0.893; evalue=0; confidence=high
Rice	`Os01g0767900` (OsNH2) - identity=56; qcov=0.912; evalue=0; confidence=high
GO	GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0009862 (systemic acquired resistance, salicylic acid mediated signaling pathway); GO:0042742 (defense response to bacterium); GO:0050832 (defense response to fungus); GO:2000022 (regulation of jasmonic acid mediated signaling pathway); GO:2000031 (regulation of salicylic acid mediated signaling pathway)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00023 (Ank); PF00651 (BTB); PF11900 (DUF3420); PF12313 (NPR1_like_C); PF12796 (Ank_2); PF13857 (Ank_5)
InterPro	-
eggNOG	-
NR	GeneID:131009504

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057792863.1`
2	Cytoplasm	细胞质	0.80000	`XP_057792861.1`
3	Nucleus	细胞核	0.20000	`XP_057792861.1`
4	Chromosome	染色体	0.00000	`XP_057792861.1`
5	Centromere	着丝粒	0.00000	`XP_057792861.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75436698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B70,C62
`Chr2:75436726`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D11
`Chr2:75436801`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B3
`Chr2:75437399`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B45
`Chr2:75437421`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B126,B139,B71,C39,C40
`Chr2:75437490`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B103,B19,B74
`Chr2:75437538`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B33
`Chr2:75437609`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A23,B11,B112,C37
`Chr2:75437685`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B126,B139,B71,C39,C40
`Chr2:75437736`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A6,C33
`Chr2:75437751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A6,C33
`Chr2:75437754`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B102,B86,C44

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792861.1

616 aa

308

616

BTB

DUF3420

Ank_2

Ank_5

Ank

NPR1_like_C

PF00651 BTB 62-146 aa PF11900 DUF3420 228-276 aa PF12796 Ank_2 275-360 aa PF13857 Ank_5 322-373 aa PF00023 Ank 334-360 aa PF12313 NPR1_like_C 375-437 aa PF12313 NPR1_like_C 463-601 aa

XP_057792862.1

616 aa

308

616

BTB

DUF3420

Ank_2

Ank_5

Ank

NPR1_like_C

PF00651 BTB 62-146 aa PF11900 DUF3420 228-276 aa PF12796 Ank_2 275-360 aa PF13857 Ank_5 322-373 aa PF00023 Ank 334-360 aa PF12313 NPR1_like_C 375-437 aa PF12313 NPR1_like_C 463-601 aa

XP_057792863.1

591 aa

296

591

BTB

DUF3420

Ank_2

Ank_5

Ank

NPR1_like_C

PF00651 BTB 62-146 aa PF11900 DUF3420 228-276 aa PF12796 Ank_2 275-360 aa PF13857 Ank_5 322-373 aa PF00023 Ank 334-360 aa PF12313 NPR1_like_C 375-576 aa

XP_057792864.1

591 aa

296

591

BTB

DUF3420

Ank_2

Ank_5

Ank

NPR1_like_C

PF00651 BTB 62-146 aa PF11900 DUF3420 228-276 aa PF12796 Ank_2 275-360 aa PF13857 Ank_5 322-373 aa PF00023 Ank 334-360 aa PF12313 NPR1_like_C 375-576 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792861.1`	Pfam	`PF00651`	BTB	Domain	62	146	7.6e-10	39.7	BTB/POZ domain
`XP_057792861.1`	Pfam	`PF11900`	DUF3420	Repeat	228	276	2.8e-12	47.3	Domain of unknown function (DUF3420)
`XP_057792861.1`	Pfam	`PF12796`	Ank_2	Repeat	275	360	8.6e-09	36.6	Ankyrin repeats (3 copies)
`XP_057792861.1`	Pfam	`PF13857`	Ank_5	Repeat	322	373	6.1e-08	33.6	Ankyrin repeats (many copies)
`XP_057792861.1`	Pfam	`PF00023`	Ank	Repeat	334	360	2e-07	31.6	Ankyrin repeat
`XP_057792861.1`	Pfam	`PF12313`	NPR1_like_C	Family	375	437	2e-74	250.3	NPR1/NIM1 like defence protein C terminal
`XP_057792861.1`	Pfam	`PF12313`	NPR1_like_C	Family	463	601	2e-74	250.3	NPR1/NIM1 like defence protein C terminal
`XP_057792862.1`	Pfam	`PF00651`	BTB	Domain	62	146	7.6e-10	39.7	BTB/POZ domain
`XP_057792862.1`	Pfam	`PF11900`	DUF3420	Repeat	228	276	2.8e-12	47.3	Domain of unknown function (DUF3420)
`XP_057792862.1`	Pfam	`PF12796`	Ank_2	Repeat	275	360	8.6e-09	36.6	Ankyrin repeats (3 copies)
`XP_057792862.1`	Pfam	`PF13857`	Ank_5	Repeat	322	373	6.1e-08	33.6	Ankyrin repeats (many copies)
`XP_057792862.1`	Pfam	`PF00023`	Ank	Repeat	334	360	2e-07	31.6	Ankyrin repeat
`XP_057792862.1`	Pfam	`PF12313`	NPR1_like_C	Family	375	437	2e-74	250.3	NPR1/NIM1 like defence protein C terminal
`XP_057792862.1`	Pfam	`PF12313`	NPR1_like_C	Family	463	601	2e-74	250.3	NPR1/NIM1 like defence protein C terminal
`XP_057792863.1`	Pfam	`PF00651`	BTB	Domain	62	146	6.9e-10	39.8	BTB/POZ domain
`XP_057792863.1`	Pfam	`PF11900`	DUF3420	Repeat	228	276	2.6e-12	47.3	Domain of unknown function (DUF3420)
`XP_057792863.1`	Pfam	`PF12796`	Ank_2	Repeat	275	360	7.9e-09	36.7	Ankyrin repeats (3 copies)
`XP_057792863.1`	Pfam	`PF13857`	Ank_5	Repeat	322	373	5.3e-08	33.8	Ankyrin repeats (many copies)
`XP_057792863.1`	Pfam	`PF00023`	Ank	Repeat	334	360	1.8e-07	31.8	Ankyrin repeat
`XP_057792863.1`	Pfam	`PF12313`	NPR1_like_C	Family	375	576	6e-81	271.6	NPR1/NIM1 like defence protein C terminal
`XP_057792864.1`	Pfam	`PF00651`	BTB	Domain	62	146	6.9e-10	39.8	BTB/POZ domain
`XP_057792864.1`	Pfam	`PF11900`	DUF3420	Repeat	228	276	2.6e-12	47.3	Domain of unknown function (DUF3420)
`XP_057792864.1`	Pfam	`PF12796`	Ank_2	Repeat	275	360	7.9e-09	36.7	Ankyrin repeats (3 copies)
`XP_057792864.1`	Pfam	`PF13857`	Ank_5	Repeat	322	373	5.3e-08	33.8	Ankyrin repeats (many copies)
`XP_057792864.1`	Pfam	`PF00023`	Ank	Repeat	334	360	1.8e-07	31.8	Ankyrin repeat
`XP_057792864.1`	Pfam	`PF12313`	NPR1_like_C	Family	375	576	6e-81	271.6	NPR1/NIM1 like defence protein C terminal

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057936881.1
AATTTCATCAAACTGAGCTTTAAAATTGTAGATGACAAAAACTCCCAAATCTAATAGGCATATGACAAAATCTATGAAATATTTTTACGTGATTCTATTTGAATCTTTGCCACTTCCAATCTCCCACACTAATATTTGTATTAGTAATGCTACTAGTTGCTCTTTAACTTGTTTTATCCAACAAAAAAATAAAAATAAAAAAATGCTAGTACTAGTTTCTGAAATTTGCAATTTGCAAGCTGTTGAGAGTGAAGACTCCG...

XM_057936879.1
CTAATATTTGTATTAGTAATGCTACTAGTTGCTCTTTAACTTGTTTTATCCAACAAAAAAATAAAAATAAAAAAATGCTAGTACTAGTTTCTGAAATTTGCAATTTGCAAGCTGTTGAGAGTGAAGACTCCGGCTCAAGTCAACACCCAATCACAAAATATGCAATCTCTCGCCATAATCAAGCATCCCGGTTCAAAAAGTTGGAATCTTTTTACTGATTTTGATGATCGTAGTTAGGTTTTGGAGGATTTATGCTCCAA...

CDS

4 records

下载 CDS FASTA

LOC131009504
ATGGAGAATGGCAATGATCCGTCGTCGTCCTTGAGTTTCGCCTCGTCTTCGTATCTATCGAACGGCTCGAGTGGCCACAATGCACCTTCGTCTAATGTCTGCGAAGTAGGGACTAATCTCGAGTTCTTGAGCTTGAGTAGGCTTAGCTTGAGTCTTGAGAGGCTGGTGGTTGGTTCTGACTATGACTATAGTGACGCGGAGGTGGAGGTCGAGGGGGTGAGTGTAGGTGTCAACCGCTGCATCCTAGCTGCACGGAGCGA...

Protein

4 records

下载 Protein FASTA

XP_057792861.1
MENGNDPSSSLSFASSSYLSNGSSGHNAPSSNVCEVGTNLEFLSLSRLSLSLERLVVGSDYDYSDAEVEVEGVSVGVNRCILAARSEFFHQLFRNTSVDSSMREVKGKPKYLMKDLVPEGRVCYEAFMVVLNYLYTGKVRASPTDVSTCVDESCAHDACGPAINYAVEMMYASATFQIKELVMVVQRRLLNFVDKAYVEDVMPILMVAFHCGLQQLLSHCLQRVARSDVDNIILEKELPVEVLNDVRSLRLKSNQDEEHN...

XP_057792862.1
MENGNDPSSSLSFASSSYLSNGSSGHNAPSSNVCEVGTNLEFLSLSRLSLSLERLVVGSDYDYSDAEVEVEGVSVGVNRCILAARSEFFHQLFRNTSVDSSMREVKGKPKYLMKDLVPEGRVCYEAFMVVLNYLYTGKVRASPTDVSTCVDESCAHDACGPAINYAVEMMYASATFQIKELVMVVQRRLLNFVDKAYVEDVMPILMVAFHCGLQQLLSHCLQRVARSDVDNIILEKELPVEVLNDVRSLRLKSNQDEEHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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