Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005547

染色体: Chr02 坐标: 75460086-75462745 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005547
名称SmilChr02G005547
描述protein JASON-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向75460086 - 75462745 / +

ID 对照

NCBI Gene IDLOC131009508
GeneID131009508
locus_tag-
NCBI NameLOC131009508
原始查询LOC131009508

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog
描述protein JASON-like
产物protein JASON-like
ArabidopsisAT2G30820 (AT2G30820)
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit [Source:NCBI gene (formerly Entrezgene);Acc:817633]
identity=66.3; qcov=0.281; evalue=1.14e-35; confidence=weak
RiceOs03g0777100
-
identity=58.7; qcov=0.337; evalue=1.41e-35; confidence=low
GOGO:0007142 (male meiosis II)
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131009508

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cell membrane 细胞膜 1.00000 XP_057792870.1
2 Nucleus 细胞核 0.20000 XP_057792870.1
3 Cytoplasm 细胞质 0.20000 XP_057792870.1
4 Cytosol 细胞质基质 0.20000 XP_057792870.1
5 Chromosome 染色体 0.00000 XP_057792870.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:75460351 C T EMS_canonical_SNV CDS_variant 3 B136,B20,C44
Chr2:75460360 C T EMS_canonical_SNV CDS_variant 2 A10,A15
Chr2:75460742 C T EMS_canonical_SNV CDS_variant 2 A1,B4
Chr2:75461127 C T EMS_canonical_SNV CDS_variant 3 B122,B13,B46
Chr2:75461140 C T EMS_canonical_SNV CDS_variant 3 B136,B20,C44
Chr2:75461197 C T EMS_canonical_SNV CDS_variant 5 A22,B105,B2,C51,D10
Chr2:75461268 C T EMS_canonical_SNV CDS_variant 1 B64
Chr2:75461474 C T EMS_canonical_SNV CDS_variant 5 B134,B28,B62,B76,C77
Chr2:75461478 G A EMS_canonical_SNV CDS_variant 1 B53
Chr2:75461481 C T EMS_canonical_SNV CDS_variant 1 C29
Chr2:75461529 G A EMS_canonical_SNV CDS_variant 2 B118,B93
Chr2:75461563 G A EMS_canonical_SNV CDS_variant 2 A1,B4

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057936887.1
AAAACGCAAAGGAGCCATCAGCACAGCGACACTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCCTCAGCTCTTTCTCTCTCTAGAATGATTCCATGAATTCCCGATAATTCAATTCAGTAAAGCTCATTCCATTTATAGAGATACACACATGATTTCACTACTAAATTGAGCAAGCGTTATGGCATAAATTTTGTTGCGCGAAGAGGAAAACGTAGAGTGAGCAGAGGCGTAGGGCTCGCCGCATCAATG...
XM_057936888.1
AAAACGCAAAGGAGCCATCAGCACAGCGACACTCCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCTCTCCTCAGCTCTTTCTCTCTCTAGAATGATTCCATGAATTCCCGATAATTCAATTCAGTAAAGCTCATTCCATTTATAGAGATACACACATGATTTCACTACTAAATTGAGCAAGCGTTATGGCATAAATTTTGTTGCGCGAAGAGGAAAACGTAGAGTGAGCAGAGGCGTAGGGCTCGCCGCATCAATG...

CDS

2 records

下载 CDS FASTA
LOC131009508
ATGAGCTGCTTTTTCGCCTGTTTTCGCGTCAAAGACTCCGGCACTAATCTCGTTACTCCTTCGGAGCCTGCTGTTCCTCGCAGTAAAAATGCGCTGTCGTCGCTGTTCCAGTGTGATGGTAACTCATCTGCGTGTGTGAATGAATCGCTTCAAAAAGGAGAGGAGCGTCAGAATCGGTTGCCCGGAGAAATCGATGTCAGCGAGTTTAAGGATGAGAATAAGTTTTCCAAACCAAATGGAACTACACTCGAAACTCCTAT...
LOC131009508
ATGAGCTGCTTTTTCGCCTGTTTTCGCGTCAAAGACTCCGGCACTAATCTCGTTACTCCTTCGGAGCCTGCTGTTCCTCGCAGTAAAAATGCGCTGTCGTCGCTGTTCCAGTGTGATGATGAATCGCTTCAAAAAGGAGAGGAGCGTCAGAATCGGTTGCCCGGAGAAATCGATGTCAGCGAGTTTAAGGATGAGAATAAGTTTTCCAAACCAAATGGAACTACACTCGAAACTCCTATCAAAATCCGAAAAGCCTTGGA...

Protein

2 records

下载 Protein FASTA
XP_057792870.1
MSCFFACFRVKDSGTNLVTPSEPAVPRSKNALSSLFQCDGNSSACVNESLQKGEERQNRLPGEIDVSEFKDENKFSKPNGTTLETPIKIRKALEKWEDASAQIEAQKSLKFDSWLPNASMEKLKLEKQSNESSTLAGSCSFLDTPSSCMTDGHYTGGISSTSVQGGDIHNAAEIQASDRTAISSISSEQSGSADAHSVTRPLSYPNMEEFDEGGEDSALCHHGESNEQNDVEDANDEEGGLTSWFKPISAKQSGSNKQFS...
XP_057792871.1
MSCFFACFRVKDSGTNLVTPSEPAVPRSKNALSSLFQCDDESLQKGEERQNRLPGEIDVSEFKDENKFSKPNGTTLETPIKIRKALEKWEDASAQIEAQKSLKFDSWLPNASMEKLKLEKQSNESSTLAGSCSFLDTPSSCMTDGHYTGGISSTSVQGGDIHNAAEIQASDRTAISSISSEQSGSADAHSVTRPLSYPNMEEFDEGGEDSALCHHGESNEQNDVEDANDEEGGLTSWFKPISAKQSGSNKQFSSISSQNK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器