Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005554`

染色体: Chr02 坐标: 75506561-75509709 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005554`
名称	SmilChr02G005554
描述	uncharacterized SmilChr02G005554
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75506561 - 75509709 / `+`

ID 对照

NCBI Gene ID	`LOC131009516`
GeneID	`131009516`
locus_tag	`-`
NCBI Name	`LOC131009516`
原始查询	`LOC131009516`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Rrp15p protein [Source:NCBI gene (formerly Entrezgene);Acc:834877]; symbol=AT5G48240; hit=AT5G48240; species=arabidopsis; confidence=high
产物	Rrp15p protein [Source:NCBI gene (formerly Entrezgene);Acc:834877]; symbol=AT5G48240; hit=AT5G48240; species=arabidopsis; confidence=high
Arabidopsis	`AT5G48240` (AT5G48240) Rrp15p protein [Source:NCBI gene (formerly Entrezgene);Acc:834877] identity=52.5; qcov=0.988; evalue=4.19e-94; confidence=high
Rice	`Os11g0266000` - identity=43.3; qcov=0.938; evalue=7.37e-63; confidence=medium
GO	GO:0000460 (maturation of 5.8S rRNA); GO:0000470 (maturation of LSU-rRNA); GO:0030687 (preribosome, large subunit precursor)
KEGG	-
Pfam	PF07890 (Rrp15p)
InterPro	-
eggNOG	-
NR	GeneID:131009516

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057792888.1`
2	Nucleolus	核仁	1.00000	`XP_057792888.1`
3	Chromosome	染色体	0.00000	`XP_057792888.1`
4	Centromere	着丝粒	0.00000	`XP_057792888.1`
5	Chromatin	染色质	0.00000	`XP_057792888.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75506671`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A1
`Chr2:75506814`	`G`	`GA`	1bp_insertion	frameshift_variant	12	A23,A8,B11,B117,B124,B55,B69,C23,C41,C46,C6,D2
`Chr2:75507014`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75507029`	`TA`	`T`	1bp_deletion	frameshift_variant	1	B72
`Chr2:75507029`	`TA`	`T`	1bp_deletion	CDS_variant	1	B72
`Chr2:75507057`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	D2
`Chr2:75507230`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B36,B59,D3
`Chr2:75507813`	`G`	`GAA`	2bp_insertion	frameshift_variant	7	B13,B37,B38,B39,B60,B78,C36
`Chr2:75507820`	`TTC`	`T`	2bp_deletion	frameshift_variant	7	B13,B37,B38,B39,B60,B78,C36
`Chr2:75508096`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B79,C81
`Chr2:75508833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B6
`Chr2:75508842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B120

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792888.1

320 aa

160

320

Rrp15p

PF07890 Rrp15p 130-250 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792888.1`	Pfam	`PF07890`	Rrp15p	Family	130	250	2.7e-22	80.2	Rrp15p

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936905.1
AACCCTAACATAAGCCCTAGTTGAAATTTGGGGAAAGTTTTGAGTGAAATTCTCAGAGGTGAAAGTGATGACAGAAGCAACGCAATCCGTTGATGCGAAGCATGTCGGAAGGAAACGGAAATCGGGGAAAAAGAAGGGGATAATGGCGAAGAAGAGGCAAAGAACGATGCAGCGAGGTTCTGAAAGGAAGGTCAAAATTAATCCGAAAGCGAGGAAATTGTATCAGAAAAGGGCTAGGGATTACAATTCCGACGAGGAAG...

CDS

1 records

下载 CDS FASTA

LOC131009516
ATGACAGAAGCAACGCAATCCGTTGATGCGAAGCATGTCGGAAGGAAACGGAAATCGGGGAAAAAGAAGGGGATAATGGCGAAGAAGAGGCAAAGAACGATGCAGCGAGGTTCTGAAAGGAAGGTCAAAATTAATCCGAAAGCGAGGAAATTGTATCAGAAAAGGGCTAGGGATTACAATTCCGACGAGGAAGATGAAGATGAGGAGGAGCCCGAGCAAGCCGCCAGTGCAGTTGCAGTTGACGAACGCAAGCAAATTGG...

Protein

1 records

下载 Protein FASTA

XP_057792888.1
MTEATQSVDAKHVGRKRKSGKKKGIMAKKRQRTMQRGSERKVKINPKARKLYQKRARDYNSDEEDEDEEEPEQAASAVAVDERKQIGDGFDDDGDEENEGVEGEEEEVSEDESGKIQPGIVRFSEGIKAFKSAFKKIVKKSGGDEDVLGPVLSANKKLLAEKLAEEDLEKKVKGDAKKEKHMISEKGHVKPAEFLDAHEKFLLGVATKGVVKLFNAVNKAQNAQKGLNPLRTKDEKVIKQRRKEAFFSELGRTSTQSAAT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器