Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005570

染色体: Chr02 坐标: 75592284-75597179 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005570
名称SmilChr02G005570
描述protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向75592284 - 75597179 / -

ID 对照

NCBI Gene IDLOC131009522
GeneID131009522
locus_tag-
NCBI NameLOC131009522
原始查询LOC131009522

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述protein ACTIVITY OF BC1 COMPLEX KINASE 7, chloroplastic-like
产物protein ACTIVITY OF BC1 COMPLEX KINASE 7%2C chloroplastic-like
ArabidopsisAT3G07700 (AT3G07700)
Protein kinase superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:819961]
identity=71.9; qcov=1.03; evalue=0; confidence=high
RiceOs09g0250700
-
identity=69.9; qcov=1.05; evalue=0; confidence=high
GOGO:0046467 (GO:0046467); GO:1901031 (regulation of response to reactive oxygen species)
KEGG-
PfamPF03109 (ABC1)
InterPro-
eggNOG-
NRGeneID:131009522

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Chloroplast 叶绿体 1.00000 XP_057792900.1
2 Chloroplast thylakoid 类囊体 1.00000 XP_057792900.1
3 Chloroplast membrane 叶绿体膜 0.60000 XP_057792900.1
4 Chloroplast thylakoid membrane 类囊体膜 0.40000 XP_057792900.1
5 Nucleus 细胞核 0.00000 XP_057792900.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:75592741 G A EMS_canonical_SNV CDS_variant 1 D10
Chr2:75592746 G A EMS_canonical_SNV CDS_variant 1 B80
Chr2:75592779 G A EMS_canonical_SNV CDS_variant 5 B113,B45,C60,D11,D6
Chr2:75592920 G A EMS_canonical_SNV CDS_variant 2 A22,C25
Chr2:75593299 G A EMS_canonical_SNV CDS_variant 2 C14,C42
Chr2:75593479 C CT 1bp_insertion frameshift_variant 1 A11
Chr2:75593479 C CT 1bp_insertion CDS_variant 1 A11
Chr2:75594118 G A EMS_canonical_SNV CDS_variant 5 B109,B124,B93,B99,C15
Chr2:75594181 G A EMS_canonical_SNV CDS_variant 1 C2
Chr2:75594406 G A EMS_canonical_SNV CDS_variant 4 B104,B118,B12,B55
Chr2:75594861 G A EMS_canonical_SNV CDS_variant 5 A22,B100,B110,C25,C34
Chr2:75594997 G A EMS_canonical_SNV CDS_variant 1 C8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792900.1
677 aa
N
1
338
677
ABC1
C
PF03109 ABC1 208-453 aa
XP_057792901.1
677 aa
N
1
338
677
ABC1
C
PF03109 ABC1 208-453 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792900.1 Pfam PF03109 ABC1 Domain 208 453 7.6e-86 288.0 ABC1 atypical kinase-like domain
XP_057792901.1 Pfam PF03109 ABC1 Domain 208 453 7.6e-86 288.0 ABC1 atypical kinase-like domain

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA
XM_057936918.1
TGTTTTGGTGTGTTTCAATATTTTTCACTAATTTTCACCAAAAAAAAAAAGCTGGTCCACCCAAAATCAAGAATTGGGTGATAAAAAATAATGGGGAAAAAGGAAAAACCAGAATTGGGTAGTATCACTTTCAAGACTTATAGTAGTTCATAACGTAAAAGAATCAAAAATTGATGCATCGTCAATCAAGATTTGGACTTTCACCACACATGAGGAGCACATCACAACACGTCAGACACAATTTCACAGCCCAATTTCAG...
XM_057936917.1
GAAAAACCAGAATTGGGTAGTATCACTTTCAAGACTTATAGTAGTTCATAACGTAAAAGAATCAAAAATTGATGCATCGTCAATCAAGATTTGGACTTTCACCACACATGAGGAGCACATCACAACACGTCAGACACAATTTCACAGCCCAATTTCAGGTGTGGGCTGCTCTTTTTCTTGTCTTCAGCTGCATAATATCTATATAATTTCATGGTGGTGCTTTTCTTTCAACAAAATCTTGCAGAAATTTGAGTTGGGAG...

CDS

2 records

下载 CDS FASTA
LOC131009522
ATGGCTGCAATTCTAGCTTCCTTTAGCTGTCAAGGAAGATCAGGAGATGATCTTAGTTTCTCAGGGAACATATCAAACTACGACCAATCAAGAATCGACAGAGATGTTGTCAAAACCAGAAGAAAGCTCCGTAGTTTGCAGGTCGCGATGGAGTTATCCACAAACGGGCGAGCAACCAAAATGGTGAAGGAGAAATCGGTGTCCATTAGTTCATCACGGGGTGTGAATGGATCTGCGAAGAATGTTAATGGTGGAGTGCT...
LOC131009522
ATGGCTGCAATTCTAGCTTCCTTTAGCTGTCAAGGAAGATCAGGAGATGATCTTAGTTTCTCAGGGAACATATCAAACTACGACCAATCAAGAATCGACAGAGATGTTGTCAAAACCAGAAGAAAGCTCCGTAGTTTGCAGGTCGCGATGGAGTTATCCACAAACGGGCGAGCAACCAAAATGGTGAAGGAGAAATCGGTGTCCATTAGTTCATCACGGGGTGTGAATGGATCTGCGAAGAATGTTAATGGTGGAGTGCT...

Protein

2 records

下载 Protein FASTA
XP_057792900.1
MAAILASFSCQGRSGDDLSFSGNISNYDQSRIDRDVVKTRRKLRSLQVAMELSTNGRATKMVKEKSVSISSSRGVNGSAKNVNGGVLVKRDPAPRTPKANELPPIEGLKVLPSDEGFSWANENYNSVQRSIDVWSFVLSLRARVFLDNAKWTYIGGFSEEKQVGRRRKTASWLRECVLQLGPTFIKLGQLSSTRSDLFPKEFVDELAKLQDRVPAFSPSKAKGFIEKELGAPLYMLYKEFEDLPIAAASLGQVHRAILHN...
XP_057792901.1
MAAILASFSCQGRSGDDLSFSGNISNYDQSRIDRDVVKTRRKLRSLQVAMELSTNGRATKMVKEKSVSISSSRGVNGSAKNVNGGVLVKRDPAPRTPKANELPPIEGLKVLPSDEGFSWANENYNSVQRSIDVWSFVLSLRARVFLDNAKWTYIGGFSEEKQVGRRRKTASWLRECVLQLGPTFIKLGQLSSTRSDLFPKEFVDELAKLQDRVPAFSPSKAKGFIEKELGAPLYMLYKEFEDLPIAAASLGQVHRAILHN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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