Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G005569`

染色体: Chr02 坐标: 75584703-75589431 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G005569`
名称	SmilChr02G005569
描述	acetyl-CoA acetyltransferase 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	75584703 - 75589431 / `-`

ID 对照

NCBI Gene ID	`LOC131009528`
GeneID	`131009528`
locus_tag	`-`
NCBI Name	`LOC131009528`
原始查询	`LOC131009528`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	acetyl-CoA acetyltransferase 2-like
产物	acetyl-CoA acetyltransferase 2-like
Arabidopsis	`AT5G48230` (ACAT2) acetoacetyl-CoA thiolase 2 [Source:NCBI gene (formerly Entrezgene);Acc:834876] identity=85.6; qcov=1; evalue=0; confidence=high
Rice	`Os09g0252100` - identity=80.6; qcov=0.983; evalue=0; confidence=high
GO	GO:0003985 (acetyl-CoA C-acetyltransferase activity); GO:0006635 (fatty acid beta-oxidation)
KEGG	smil00071 (Fatty acid degradation - Salvia miltiorrhiza (redroot sage)); smil00280 (Valine, leucine and isoleucine degradation - Salvia miltiorrhiza (redroot sage)); smil00310 (Lysine degradation - Salvia miltiorrhiza (redroot sage)); smil00380 (Tryptophan metabolism - Salvia miltiorrhiza (redroot sage)); smil00620 (Pyruvate metabolism - Salvia miltiorrhiza (redroot sage)); smil00630 (Glyoxylate and dicarboxylate metabolism - Salvia miltiorrhiza (redroot sage)); smil00650 (Butanoate metabolism - Salvia miltiorrhiza (redroot sage)); smil00900 (Terpenoid backbone biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage)); smil01200 (Carbon metabolism - Salvia miltiorrhiza (redroot sage)); smil01212 (Fatty acid metabolism - Salvia miltiorrhiza (redroot sage))
Pfam	PF00108 (Thiolase_N); PF00109 (ketoacyl-synt); PF02803 (Thiolase_C)
InterPro	-
eggNOG	-
NR	GeneID:131009528

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	0.60000	`XP_057792908.1`
2	Peroxisome	过氧化物酶体	0.40000	`XP_057792908.1`
3	Cytoplasm	细胞质	0.20000	`XP_057792908.1`
4	Cytosol	细胞质基质	0.20000	`XP_057792908.1`
5	Mitochondrion matrix	线粒体基质	0.20000	`XP_057792908.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:75585300`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B91,C51
`Chr2:75585317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75585365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B17,B20,C44
`Chr2:75585366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C55
`Chr2:75585698`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B89
`Chr2:75585897`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:75586099`	`A`	`AC`	1bp_insertion	frameshift_variant	102	A1,A13,A14,A16,A18,A19,A2,A20,A21,A6,B1,B101,B105,B106,B109,B11,B110,B111,B114,B117,B12,B124,B125,B126,B129,B13,B132,B133,B134,B137,B16,B17,B18,B20,B21,B22,B24,B25,B26,B28,B35,B41,B44,B45,B46,B51,B55,B56,B66,B69,B7,B74,B76,B77,B8,B81,B82,B83,B85,B86,B89,B91,B93,B96,B97,B98,B99,C1,C12,C14,C15,C18,C2,C20,C21,C23,C25,C26,C31,C35,C39,C41,C43,C44,C48,C51,C52,C54,C55,C57,C59,C63,C65,C70,C71,C74,C76,C77,C8,C84,C87,D8
`Chr2:75586101`	`CT`	`C`	1bp_deletion	frameshift_variant	102	A1,A13,A14,A16,A18,A19,A2,A20,A21,A6,B1,B101,B105,B106,B109,B11,B110,B111,B114,B117,B12,B124,B125,B126,B129,B13,B132,B133,B134,B137,B16,B17,B18,B20,B21,B22,B24,B25,B26,B28,B35,B41,B44,B45,B46,B51,B55,B56,B66,B69,B7,B74,B76,B77,B8,B81,B82,B83,B85,B86,B89,B91,B93,B96,B97,B98,B99,C1,C12,C14,C15,C18,C2,C20,C21,C23,C25,C26,C31,C35,C39,C41,C43,C44,C48,C51,C52,C54,C55,C57,C59,C63,C65,C70,C71,C74,C76,C77,C8,C84,C87,D8
`Chr2:75586126`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B50,C14,C42
`Chr2:75586163`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B31,B70,C62,C79
`Chr2:75586916`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:75586988`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B133,B4,C6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057792908.1

403 aa

202

403

Thiolase_N

ketoacyl-synt

Thiolase_C

PF00108 Thiolase_N 13-271 aa PF00109 ketoacyl-synt 93-134 aa PF02803 Thiolase_C 281-401 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057792908.1`	Pfam	`PF00108`	Thiolase_N	Domain	13	271	3.9e-93	312.3	Thiolase, N-terminal domain
`XP_057792908.1`	Pfam	`PF00109`	ketoacyl-synt	Domain	93	134	6.2e-05	23.4	Beta-ketoacyl synthase, N-terminal domain
`XP_057792908.1`	Pfam	`PF02803`	Thiolase_C	Domain	281	401	6.7e-45	152.4	Thiolase, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057936925.1
ACAATTTTGACCTCTAAAAATCCCGTTCCGAAATCTATTCATACAAAGATCCAATCTTTATCATAAAATCTGTATTAGATTATCAATTTATCATACAAAAATTAAAATCCTTATTTTATTTTTCTGCACAAGTATTTTGAAGTAAAAAAAATTGGCGATTGTTCGAGTGTGGAGTCAAGAAAGCCGGTTAATTTAGTCTCTGTTCAAACTACACCAACTCACACACACTACACACAGTGAAACACCCCCCACCCCACCCA...

CDS

1 records

下载 CDS FASTA

LOC131009528
ATGGCACCAGAAGCTGCTTCAATCAACCCAAAAGATGTTTGCATCGTGGGTGTTGCTCGGACACCTATGGGTGGTTTTCTCGGTTCACTCTCATCAGTACCGGCAACCAAGCTTGGATCCGTAGCTATTCAGAGTGCTTTGAAGAGAGCAAATATCGATCCATCACTTGTACAAGAAGTTTTCTTCGGGAATGTACTCAGCGCAAACTTAGGACAGGCTCCTGCCCGTCAGGCAGCGTTGGGTGCCGGGATCCCGAATTC...

Protein

1 records

下载 Protein FASTA

XP_057792908.1
MAPEAASINPKDVCIVGVARTPMGGFLGSLSSVPATKLGSVAIQSALKRANIDPSLVQEVFFGNVLSANLGQAPARQAALGAGIPNSVVCTTINKVCASGMKATMLAAQSIQLGLNDVVVAGGMESMSNVPKYIAEARKGSRLGHDSLVDGMLKDGLWDVYNDVGMGVCAELCAEHHSITREQQDDFAVQSFERGIAAQDAGAFAWEITPVEVSGGRGRPSTIVDKDEGLGKFDAAKLRKLRPSFKETGGTVTAGNASSI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器