Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G005568

染色体: Chr02 坐标: 75583220-75584946 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G005568
名称SmilChr02G005568
描述transmembrane emp24 domain-containing protein p24beta2-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向75583220 - 75584946 / +

ID 对照

NCBI Gene IDLOC131009531
GeneID131009531
locus_tag-
NCBI NameLOC131009531
原始查询LOC131009531

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述transmembrane emp24 domain-containing protein p24beta2-like
产物transmembrane emp24 domain-containing protein p24beta2-like
ArabidopsisAT3G07680 (p24beta2)
emp24/gp25L/p24 family/GOLD family protein [Source:NCBI gene (formerly Entrezgene);Acc:819959]
identity=68.3; qcov=0.957; evalue=2.45e-103; confidence=high
RiceOs08g0532900
-
identity=65.8; qcov=0.957; evalue=1.11e-103; confidence=high
GOGO:0005783 (endoplasmic reticulum); GO:0005793 (endoplasmic reticulum-Golgi intermediate compartment); GO:0005794 (Golgi apparatus); GO:0006886 (intracellular protein transport); GO:0006888 (endoplasmic reticulum to Golgi vesicle-mediated transport); GO:0007030 (Golgi organization); GO:0030134 (COPII-coated ER to Golgi transport vesicle)
KEGG-
PfamPF01105 (EMP24_GP25L)
InterPro-
eggNOG-
NRGeneID:131009531

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Endoplasmic reticulum 内质网 1.00000 XP_057792912.1
2 Endoplasmic reticulum membrane 内质网膜 1.00000 XP_057792912.1
3 Golgi apparatus 高尔基体 1.00000 XP_057792912.1
4 Cis-golgi network Cis-golgi network 1.00000 XP_057792912.1
5 Golgi stack 高尔基堆 1.00000 XP_057792912.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:75583546 G A EMS_canonical_SNV CDS_variant 3 B50,C14,C42
Chr2:75583552 G A EMS_canonical_SNV CDS_variant 1 C2
Chr2:75583566 C T EMS_canonical_SNV CDS_variant 1 C60
Chr2:75583660 C T EMS_canonical_SNV CDS_variant 5 B31,B70,B80,C60,C62
Chr2:75583723 G A EMS_canonical_SNV CDS_variant 2 B111,B129
Chr2:75583771 G A EMS_canonical_SNV CDS_variant 4 B133,B4,C6,D9
Chr2:75583774 G A EMS_canonical_SNV CDS_variant 3 B50,C14,C42
Chr2:75583807 G A EMS_canonical_SNV CDS_variant 5 C11,C51,C69,C74,C87
Chr2:75584005 G A EMS_canonical_SNV CDS_variant 2 B50,C42
Chr2:75584445 C T EMS_canonical_SNV CDS_variant 1 C51
Chr2:75584460 C T EMS_canonical_SNV CDS_variant 4 B133,B4,C6,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057792912.1
211 aa
N
1
106
211
EMP24_GP25L
C
PF01105 EMP24_GP25L 31-203 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057792912.1 Pfam PF01105 EMP24_GP25L Domain 31 203 3.4e-33 115.9 emp24/gp25L/p24 family/GOLD

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057936929.1
CCAACTAAGGAGACGTGTTCTTGAGCTACTCACCTCATTATGTTTTTCTCTTTGATCCCAAGCCTCAATAACAAAATTCCCATGAATTAAACCTCGTATATACTTATATATATTTATTGAATATTTGCATAGATTTGTGGTAAATGAAGATGGGAATGTTGATGTTTTTGATGATGGTGGTGGTGATAGGATGTTTGATGAGAGTAGGATTAGGTATAAGATTTGTGATCGACAAAGAGGAGTGCTTCTCACACAACATT...

CDS

1 records

下载 CDS FASTA
LOC131009531
ATGAAGATGGGAATGTTGATGTTTTTGATGATGGTGGTGGTGATAGGATGTTTGATGAGAGTAGGATTAGGTATAAGATTTGTGATCGACAAAGAGGAGTGCTTCTCACACAACATTCTCTACGAAGGCGACGTCGTTCATTCTTCTTTCGTCGTCATCAAAGCTGATAACGCTTGGCATCACGTCGACGATGGCATCGATTTCGTTATAAAGGGGCCAGGCGGGGAGAAGATCAAAGAGTTCCACGATAAGATTAGCGA...

Protein

1 records

下载 Protein FASTA
XP_057792912.1
MKMGMLMFLMMVVVIGCLMRVGLGIRFVIDKEECFSHNILYEGDVVHSSFVVIKADNAWHHVDDGIDFVIKGPGGEKIKEFHDKISDKYEFIAERKGIYHFCFSNKSPFHETVDFDVLVGHYRTYDQHAKSEHFNPVVEQISKLEEALYNIQFEQHWLEAQTDRQALVNESMSQRAVFKAIFESLALIGASSLQVFLLQRLFERKLGTSRV

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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